| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1420 |
|---|
| Symbol | |
|---|
| ID | 5609656 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 1684700 |
|---|
| End bp | 1686136 |
|---|
| Gene Length | 1437 bp |
|---|
| Protein Length | 478 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640932286 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_001473159 |
|---|
| Protein GI | 157374559 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.30312 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.358597 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTTAAGAA CTGTTGCCAA AATAATCATC TACGCATTTA GCTTTCAGTT CTCACTGTGC
CAGGCTCAGT TTTCACTCGA CCAGATCCCC GAGATAGAGA ATAAACAAGC CATAACCCTC
GTTGCCGAAT CCGGTTTCTG GACAGAGCAC CTCAAAGAGA AGCTACTCCC TAAATACACG
GCTCACACAG GTATCACAGT TAATGTCATC ACCACATCTC TGGATGAGAT GTTTACCCTG
CAAACAAACT CTTTAGTCAA AGGGAGCGGA AAGTTTGACC TGCTAACCAT GGAAGCCGGC
TGGGCTAAAG AGTGGGCCGC AAATGGGTTT ACCGTCCCTT TGGACGAATT GGCAAAACTC
TATGATCCCA ATGGTGAACG AGCGATGAAA AATTATCTGG AACCTTACTA CCCTTCCCTG
CTCAACATTC TCTCTTATCA CTCCGAGATC CATGCCATCC CCTACAATAA CTATGTAATG
GGGAATCACT ATCGCGCCGA TCTGTTTCAA CATCAGAAAG AGAGGATAGA ATTCAGCGCC
CAATATGGGT ATCCGTTAGC ACCGCCGGAA AACCTGCAAC AGCTCCAGGA TGTGAGTGCG
TTTTTTACCA GAAAAACCGG AGAGAAATTG GCGGGTAAGG TACTCGAAAA GCCATTCTAT
GGCCTTACAC TGATGTCAGG AAACCGACCT CATATCAATG ATGAATTTTC ATCTATCCTC
TGGAGCCTGG ATGGCTACTG GATGAAACCC GACTACGGTA ACGGTTCGAC GCTTAAGCTA
TTTGAACTCC CGTCTGATAA TGAGAAGCTG AAACAGACTA CGCATATTTA CCGGAAGTTA
ATGCAATACG CCTACCCTGC AGATAAGCAA TTCGCATTCG AAGAGGCGGC TGGCGCTATG
GCTAACGGCG ATGTCGCCAT GTGGCCATTT GCCTATAACA ACCTTTGGCA CGCCTCTTTT
CAAGTCGAAT CGAATCAGCC CGGCGCAAAG TTAGCCGTCG CTCAGGTCCC GGGAGGCAAG
CCCTACAATG GCGCTTACGC GTTCGCTGTC GCCTACGACA GTGTCAACCC ACAGGCCGCC
TACTGGTTAC TCAAATACAT GGGATCTTTC GAGGCGCAAT TTGCCTATGC ATCAGGCGGT
GGAAACCCAT GTCGAATCGA TGTCACCACC GCTGCCGAAT TTCAAAAGAC TGAATTACGT
CATATCGGGG GGGCATTCAT GGCCAGCCAT GAGGCCAATA CAAAATGGTC AGATGATGTA
CTCAAACTGG GGCACTTCAC CAGTACCGCA ATGGGAAATA TTTATCCTGA ACTAACCAAG
ACCAGTTACG CATTATCCAA GCCTCAAACT GATATCGATG CGGAGATTAA TCGGCTCAAT
CAGACCATAA TCCAGCTTCA GAATCGTCAT GGTGAAGTGC CAGTGGTAGC GAAATGA
|
|---|
| Protein sequence | MLRTVAKIII YAFSFQFSLC QAQFSLDQIP EIENKQAITL VAESGFWTEH LKEKLLPKYT
AHTGITVNVI TTSLDEMFTL QTNSLVKGSG KFDLLTMEAG WAKEWAANGF TVPLDELAKL
YDPNGERAMK NYLEPYYPSL LNILSYHSEI HAIPYNNYVM GNHYRADLFQ HQKERIEFSA
QYGYPLAPPE NLQQLQDVSA FFTRKTGEKL AGKVLEKPFY GLTLMSGNRP HINDEFSSIL
WSLDGYWMKP DYGNGSTLKL FELPSDNEKL KQTTHIYRKL MQYAYPADKQ FAFEEAAGAM
ANGDVAMWPF AYNNLWHASF QVESNQPGAK LAVAQVPGGK PYNGAYAFAV AYDSVNPQAA
YWLLKYMGSF EAQFAYASGG GNPCRIDVTT AAEFQKTELR HIGGAFMASH EANTKWSDDV
LKLGHFTSTA MGNIYPELTK TSYALSKPQT DIDAEINRLN QTIIQLQNRH GEVPVVAK
|
|---|
| |