Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0919 |
Symbol | |
ID | 5613257 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 1099834 |
End bp | 1101000 |
Gene Length | 1167 bp |
Protein Length | 388 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 640931767 |
Product | nucleotide sugar dehydrogenase |
Protein accession | YP_001472658 |
Protein GI | 157374058 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1004] Predicted UDP-glucose 6-dehydrogenase |
TIGRFAM ID | [TIGR03026] nucleotide sugar dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.00213667 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.147124 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAGTTG TTATCGTTGG AACCGGTTAT GTCGGTCTCT CTAACGCGAT TATTCTGGCT CAGAATAATG AAGTGGTTGC CTGTGATATT GACGAAGAGA GGGTCAATGC ATTAAACAAT CGACGCTCAC CGATTGTCGA TAAGGAAGCC GACGAGTACC TGGCCAACAG AGAGTTGAAT TTAACGGCGA CGCTGGACAA AGAGTCAGCT TTTAAAGATG CACAATACGT TATTGTTGCT ACGCCTACAG ATTATGATCC TGAAACAAAC TACTTTAATA CCTCGTCTGT CGAGTCAGTA ATAAAAGAGG TGATCGGTCT GAACCCTGAT GCCACGATCG TGATTAAATC GACAGTGCCG GTTGGGTATA CCAAGCGTTT AAGTGAAAAG TTGGGTTGTA ACAATATCAT CTTCTCTCCT GAGTTTTTAC GTGAAGGCAG GGCCGTTCAT GACAATTTAT ATCCATCACG AATTGTCATT GGTGAACATT CAGAAAGGGC TGAAATCTTT GCTAACATGC TGGTGGAGGG AGCCATTAAG AAAGATATTC CATTGCTCTT TACCGACGCT ACCGAAGCAG AAGCAATTAA GTTGTTTTCA AATACCTATC TTGCGATGCG AGTGGCTTAC TTCAACGAGT TAGATACCTA TGCCGAGACA CATGGTTTGT CATCGAGGCA GATTATCGAA GGGGTAGGGC TGGATCCTCG TATCGGCTCC CACTATAACA ATCCGTCATT TGGCTATGGT GGTTATTGCC TGCCTAAAGA TACTAAACAG CTGTTGGCGA ACTACCAGGA TGTGCCTAAT AACTTGATTA GTGCGATTGT CGATGCGAAC GTGACCCGTA AAGACTTTAT CGCCGATGCC ATCATTAAGC AGAAGCCTGA AACTGTTGGT CTCTACCGCC TGATTATGAA GTCTGGCTCG GATAACTTCC GTGCCTCTTC GATCCTCGGG ATCATGAAAC GCATCAAGGC GAAAGGAATT AAGGTCGTGG TTTATGAGCC GGTAATGAAG GAGAAAGAGT TCTTTCATTC TGAAGTGATT GAAGACCTCA ATGCGTTTAA ACAGATGTCA GATGTTATCG TCTCTAATCG TATGATGGAT GAGCTCTCAG ACGTTGAAGA TAGAGTTTAT ACCCGGGATC TCTTCGGCTC CGACTGA
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Protein sequence | MKVVIVGTGY VGLSNAIILA QNNEVVACDI DEERVNALNN RRSPIVDKEA DEYLANRELN LTATLDKESA FKDAQYVIVA TPTDYDPETN YFNTSSVESV IKEVIGLNPD ATIVIKSTVP VGYTKRLSEK LGCNNIIFSP EFLREGRAVH DNLYPSRIVI GEHSERAEIF ANMLVEGAIK KDIPLLFTDA TEAEAIKLFS NTYLAMRVAY FNELDTYAET HGLSSRQIIE GVGLDPRIGS HYNNPSFGYG GYCLPKDTKQ LLANYQDVPN NLISAIVDAN VTRKDFIADA IIKQKPETVG LYRLIMKSGS DNFRASSILG IMKRIKAKGI KVVVYEPVMK EKEFFHSEVI EDLNAFKQMS DVIVSNRMMD ELSDVEDRVY TRDLFGSD
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