| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0815 |
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| Symbol | |
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| ID | 5611935 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 968335 |
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| End bp | 969054 |
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| Gene Length | 720 bp |
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| Protein Length | 239 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640931663 |
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| Product | two-component response regulator |
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| Protein accession | YP_001472554 |
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| Protein GI | 157373954 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0000000717024 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.00000744043 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGCAAAACC CGCACATTCT GATCGTTGAA GATGAAGCCG TTACCCGGAA CACGCTAAGA
AGTATTTTCG AGGCCGAAGG ATATGTGGTA ACTGAAGCCA ATGATGGCGC AGAGATGCAT
AAAGCCATGC AGGAAAACAA AATCAACTTG GTTGTTATGG ATATCAACCT TCCTGGTAAA
AACGGTCTTT TGTTAGCACG TGAACTTCGT GAAATCAATA ACATTGGTCT GATCTTCCTA
ACGGGTCGTG ACAATGAAGT TGATAAGATT TTGGGTCTGG AGATTGGTGC TGATGATTAC
ATCACTAAGC CATTCAACCC ACGTGAGCTG ACTATCCGTG CACGTAACCT GTTGACTCGC
GTTAACAGCA CTGGCGCCGA ATCAGAAGAG AAGAGTGCCG TTGAGTACTA TCGCTTCAAC
GGTTGGAGCC TTGAAATTAA CAGCCGTTCT TTGGTTAGCC CACAAGGTGA ATCTTACAAG
CTGCCACGTA GCGAATTCCG CGCTATGCTG CACTTCGTTG AGAACCCAGG CAAGATCCTA
AGCCGTGCCG ACCTTCTGAT GAAGATGACT GGTCGCGAGC TTAAGCCACA TGACCGTACT
GTCGATGTAA CTATTCGTCG TATCCGTAAG CACTTTGAAA GCTTACCTGA TACGCCAGAA
ATCATCGCAA CGATCCACGG TGAAGGTTAT CGTTTCTGCG GTAACCTAGA AGAAGCATAA
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| Protein sequence | MQNPHILIVE DEAVTRNTLR SIFEAEGYVV TEANDGAEMH KAMQENKINL VVMDINLPGK
NGLLLARELR EINNIGLIFL TGRDNEVDKI LGLEIGADDY ITKPFNPREL TIRARNLLTR
VNSTGAESEE KSAVEYYRFN GWSLEINSRS LVSPQGESYK LPRSEFRAML HFVENPGKIL
SRADLLMKMT GRELKPHDRT VDVTIRRIRK HFESLPDTPE IIATIHGEGY RFCGNLEEA
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