Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0640 |
Symbol | |
ID | 5613757 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 776993 |
End bp | 778357 |
Gene Length | 1365 bp |
Protein Length | 454 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 640931485 |
Product | MATE efflux family protein |
Protein accession | YP_001472380 |
Protein GI | 157373780 |
COG category | [V] Defense mechanisms |
COG ID | [COG0534] Na+-driven multidrug efflux pump |
TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.690668 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 43 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAGACA GACACGGGCT GCTTACACAG CCAATTGGTC GTGTACTGCT AAATATGAGC CTCCCAAACC TGATTGGTAT CTTAACCGTT CTGGGGTTCA GCCTCGTCGA CACCTTTTTT ATCAGCCAAT TAGGTACAGA ATCACTGGCT GCGATCAGTT TTACTTTCCC GGTAACCTTA GTTATATCCA GCATAGCCAT AGGCATAGGT GCCGGGGTAT CGACTAATTT AGGCCGGCTT ATCGGCAGCG GACAAGCACC GAAAGCTAAG GTATTTTTGC ATGACTCACT GCTGCTTACC TTCTTTTTAA CTGCATTAAT CTCCCTGCTA GGTAGCCTGT GTATCGGCCC GCTGTTCACT CTGCTTGGCG CCAATGAAGC CAGCTTGCCT TTGATCTACG ATTACATGCT TATTTGGTAT CTGGGCGCCC CTATCTTAGT GCTACTCATG GTAGGGAATC AGGGGCTGCG TGCCACCGGT GATACCCACT CTCCGGCGCA GATCATGATG CTGGCAGCAC TGATAAACCT AATTTTAGAC CCCTTACTGA TCTTCGGGAT CGGACCCTTC CCGCGCTTAG AGATCCAAGG CGCGGCCATT GCCAGCGTGA TCTCCTGGGT CGTCGCCCTG TCGCTGTCAA GTTACCTCTT GATATTCAAG CGCCACCTGG TGGAGTTTGC AGCACTTAAT TTGAGCAGAC TCAGGTGTAA CTGGAAGCAG TTGGCTCATA TCGCTCAGCC TGCGGCCTTG ATGAACCTGT TAAACCCACT GGCTAATGCC ATGATCATGG CCATGCTGGC TCGTATCGAT CATGGTGCCG TTGCCGCCTT CGGTGCCGGT ACAAGGCTGG AATCGGTACT CTTGATCGTC GTGATGGCGC TCTCTTCTAG TCTGGTGCCC TTTATCGCAC AAAACCTGGG AGCCGGGCAG ACCGAACGCG CCCGTGAAGC GCTGCTGCTA TCGCTAAGGT TTGTGCTGGT ATTTCAAACC TTGCTGTACC TGCCGTTATG GTTTTTTGCC GAGCCCATCG CGCATATTTT CAGTAGTGAT CCACAAGTCA TAGAGTGGTT AACCTTCTAC ATCTTAATGC TACCGGCCGC CTATGGTCCG CTCGGCATCG TTATTCTGAT GGCAACCTCA CTCAACGCCT ATCACAGGCC CATGTGTTCG CTTGTTCTCA ATGTGTGTCG ACTGTTTCTG ATCATGTTGC CGTTAGCCGC ATTGGGCTCC TATTTAGGTG GAGTGAAAGG CTTACTATTG GCACTACCGA TCACGAACAC TATCATGGGG ATCGCCTGCT ATATTCTGGC AACTAAGGTC TCTGAACCCG AAAAGAGCCC TCAGCCAGAC GTAGAAAGTA AGTAG
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Protein sequence | MKDRHGLLTQ PIGRVLLNMS LPNLIGILTV LGFSLVDTFF ISQLGTESLA AISFTFPVTL VISSIAIGIG AGVSTNLGRL IGSGQAPKAK VFLHDSLLLT FFLTALISLL GSLCIGPLFT LLGANEASLP LIYDYMLIWY LGAPILVLLM VGNQGLRATG DTHSPAQIMM LAALINLILD PLLIFGIGPF PRLEIQGAAI ASVISWVVAL SLSSYLLIFK RHLVEFAALN LSRLRCNWKQ LAHIAQPAAL MNLLNPLANA MIMAMLARID HGAVAAFGAG TRLESVLLIV VMALSSSLVP FIAQNLGAGQ TERAREALLL SLRFVLVFQT LLYLPLWFFA EPIAHIFSSD PQVIEWLTFY ILMLPAAYGP LGIVILMATS LNAYHRPMCS LVLNVCRLFL IMLPLAALGS YLGGVKGLLL ALPITNTIMG IACYILATKV SEPEKSPQPD VESK
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