Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0566 |
Symbol | |
ID | 5612470 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 689688 |
End bp | 691109 |
Gene Length | 1422 bp |
Protein Length | 473 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 640931411 |
Product | outer membrane efflux protein |
Protein accession | YP_001472306 |
Protein GI | 157373706 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.151183 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGTTTT CACATATAGC CTTATTGTCG TTAGCGGCAC TAGGGCCTTT CACGGCTGGG GCGAAAGAGA TGGGGTTCTC TCAAGCTTGG CAACAGCTGT TAACGGTAAG CGATAAGTTG CAAGCCGGTG CTCAGGAAGT TAACCGCGCC GAGGCCGAGC ATGAAGCCGG AAAGGATCTT TATCTTCCCT CAATTAGTCT CAACGGAAGC TATACACGAC TCGAAAAGCC GATCGAGTTA GATCTTAACG ATCTTAACCC TCTCGCCTCT ATGGATCCCA GCACACTCCC GCCGTCTATC GGTGGTGCCC TTGCCGGTAT ACCAAGCTCT ATGTTTGTCA CCCAATTTAC CGAACAAGAT ATCTTTCGTT CCAGTCTCCA GGCGATGTGG CCTATCTATA CGGGAGGCAA GATCTCTGCG GCTCAGGGGA TCCATGCCGC ACATGTGATA GAAAAGGAGC AGCAGTTACA GCTCTCTACC CGTGATCTCT TTATTCAACT GGTGGATCGC TACTATGGCG TTGCGGTGAC TCAGTCATTA GCGCAGACCC GTGGTGAATT AGTCTCCTCC CTCGAAGAGC ATGCCAGTCA TGCACAGAAA CTCGAAGAGC AGGGACAGAT AGCGAAAGTC GAACGGCTCA ATGCGCAAGT TGCACTGGAA AATGCCAAGG TGAACTTTGC CAGTGCCGTG CGTCAAGCTG AAATGGCAGT TATCGCCCTA TCACGTATGC TCCATGAACA TGAAGTGGAT ACCACATCCG CGCTGTTTAT GCTCGCCGAC GCCCCCTCTC TGCCGCACCT GAGTCAACTG ACTCTGGTTC AACATCCTGC GCTGAAACTG CTCGAAGCGA AAGAGGAGCA GGCCAATGGA TTGATCGACC TGGAAAAAGG TAAGTATCAC CCTACGGTAT TTCTCTATGG TAATTACACC CTGTATGAAG ACGATAGCCT GTTTTCTAAG ATGGAGCCTG ATTGGATGCT GGGCGTCGGA GTTAAAGTGC CGTTACTGAG TCGAGACGGA CGCAGTGGCA AGGTACAGGC GGCTAAGAGT GCATTGCTTC AGGCAAGATA TACCAAGGCA CAGACCCGGC AAGATCTCAG CCTGCTACTG GATCAAAGTT ACCGTCAGCT GTTACAAGCC CAAGAGGAGG TATTATCGCT GGAGACCTCT CTTAGTTTGG CACAAGAGAA TAAGCGCCTG AGAGACCTGG CTTTTCGTCA GGGGCTATCG ACCTCGATCG AAAAGGTCGA TGCAGAACTG AAGCTTACTG CGGTAGAAAC ACAGCAGCTG GGTGCTAAAT ATCGTTATAT TCAGGCGTAT GCCAGACTCA TGGCCATCAG TGGCCAATTG GAAGAATTTT TAGGTCGCAG CGTTAGTCAT CATACTAATG TCGCGATGCA GGAGAGTAAC AATGCAGGCT AA
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Protein sequence | MKFSHIALLS LAALGPFTAG AKEMGFSQAW QQLLTVSDKL QAGAQEVNRA EAEHEAGKDL YLPSISLNGS YTRLEKPIEL DLNDLNPLAS MDPSTLPPSI GGALAGIPSS MFVTQFTEQD IFRSSLQAMW PIYTGGKISA AQGIHAAHVI EKEQQLQLST RDLFIQLVDR YYGVAVTQSL AQTRGELVSS LEEHASHAQK LEEQGQIAKV ERLNAQVALE NAKVNFASAV RQAEMAVIAL SRMLHEHEVD TTSALFMLAD APSLPHLSQL TLVQHPALKL LEAKEEQANG LIDLEKGKYH PTVFLYGNYT LYEDDSLFSK MEPDWMLGVG VKVPLLSRDG RSGKVQAAKS ALLQARYTKA QTRQDLSLLL DQSYRQLLQA QEEVLSLETS LSLAQENKRL RDLAFRQGLS TSIEKVDAEL KLTAVETQQL GAKYRYIQAY ARLMAISGQL EEFLGRSVSH HTNVAMQESN NAG
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