| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0448 |
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| Symbol | |
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| ID | 5610379 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 559788 |
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| End bp | 561824 |
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| Gene Length | 2037 bp |
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| Protein Length | 678 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640931293 |
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| Product | peptidase |
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| Protein accession | YP_001472189 |
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| Protein GI | 157373589 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1506] Dipeptidyl aminopeptidases/acylaminoacyl-peptidases |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.547634 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATTTTT TGACTAACGA TTTCGAACTG AAAATTTGGG ATATTAAAGA GGGAAATATG
AAAACGTCTC TTCACCTTAG TGCGCTAGCG CTAGCCGTAA CCTTAGGATT GGGTCTTACC
GGGTGTTCAA ACACCGCTAA AAGCTCGAAT GAGCTTGTAG CAAGTGAACC ATCAAATGTG
CAAACATCTG TGCAGAAATA TGATGCCAAG ACCTTCTTCG AAACCACAAC CTATTTTGGT
TCATCCTTCT CGGCAGATGG GCGCTCCATC TTGATGGGCT CCGATGAAAC CGGGATCTTT
AATCTTTATA AGATGGATGT TGCCTCCGGC AATAAAGTCG CACTGACTAA CTTTAAAGAC
ACCACCTATC CGATATCCTG GTTCCCTAAT GATGATCGCG TATTGCTGAC TCAGGATAAT
GGCGGCAATG AGCTCTATCA CCTGTTTGTT CGTGAGATCG ATGGAACTAT CACGGATCTG
ACCGATAGTG AAAATACCCG TGCCAACTTC GTGAACTTTA CCAATGACGG CGAGTTCTTC
TATGCCACCA CTAACGAGCG CGACCCAAAG TTTATGGATC TCTATCGTTA TGACGCTAAG
ACTTATAAAC GTACCTTAGT CTTTAAAAAT GAGCTGGGTT TTGAGATATC TGAGGTGTCA
CCGGATGGGT ACTTTCTCTC ATTAGCTAAA ACACATACCA ACAGGGATAG CGACACATAC
CTGTTAGATT TCAGAAAAAG AACCCTGAAG CCTACGCTGA TTAGCGAGCA TCAAGATCCG
GCCAATTACA GCCCAATGAC CTTCTCTTCC GATAGTCAGT TCCTGTACTA CAGCACCGAT
GCCAAGGGGG AGTTTGCACA AGTTTGGCAA TACGATATCG CCAGTGGCGA GCATGTTTTG
GCGGTGAAAG ATGATTGGAA TGTCAGCTTT GTCTACTTCT CTGAATCGGG AAAATATCGT
GTCAGTGGAG TTAACGCCGA TGCCAGCACG CGTATCAGCA TTCTAGATAC CGAATCAGGT
AAAAAGGTGA GCCTGCCTCA ACTACCCGGA GGCGATCTGC GCAGTGTCAA TTTCTCCAAA
GATGAAAGCA CTCTGTCATT CTATATCAAT TCAGATACCT CACCCTCTAA CCTCTTCGTC
TGGAAGATGG ATAGCGAGTC AGCCAAGCAG CTCACTCAAG CACTGAACCC AAAGATTAAC
CCCCAGGACT TAGTCGCGAG TGAAGTGGTG CGCTTTAAGA GCTTCGATGG ATTAGAAGTG
CCTGGCTTAC TGTTTAAGCC TAAGGGGGCG AGCGCAGACA ATAAGCGTCC TGCCGTGGTA
TTTGTTCATG GTGGCCCTGG TGGCCAGAGC CGCACCGGAT ACAGCGCTAT GCGCCAACAT
CTGATTAATC ATGGCTATGC AGTGTTTGCG GTCAATAATC GCGGCAGCTC AGGTTATGGT
AAAACCTTCT TCCATCTCGA TGATAAGAAT CATGGTGAGA ATGATCTGCA GGATATCGTC
TACGGAAAGA GGTATCTGCA AGGCTTAGAT TGGGTCGATG CAGATAAGAT TGGCATCATG
GGGGGGAGTT ATGGTGGCTA CATGACAGCC GCAGCCTTAG CCTTCGAGCC GGAGGAGTTT
AAGGTGGGTA TCGATATCTT CGGTGTCACC AACTGGGTGC GTACGCTCGA GTCTATTCCA
CCTTGGTGGG AATCGTTTAA GAAGGCCTTA TATGATGAAA TGGGTGACCC GGCGACAGAT
GCCGAGCGTC ACAGAGCCAT ATCACCACTG TTTCACGCGC AAAATATCAC TAAACCTTTG
ATGGTGATCC AGGGAGCGAA CGATCCTCGC GTCCTCAAAA TCGAGAGTGA TGAGTTGGTT
GAAAAGGTGA AGCAAAACGG AGTGCCGGTG GAATATGTGG TGTTCGATGA CGAGGGGCAT
GGTTTTAGCA AGAAAAATAA TCGTATTACG GCATCGGAAG CCTATGTGAA GTTTTTAGAT
ACCTATCTTA AAGGGGATGG CAGTCAGCTA CCTGGTGAAC GGGTCGCAAC CAAGTAG
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| Protein sequence | MDFLTNDFEL KIWDIKEGNM KTSLHLSALA LAVTLGLGLT GCSNTAKSSN ELVASEPSNV
QTSVQKYDAK TFFETTTYFG SSFSADGRSI LMGSDETGIF NLYKMDVASG NKVALTNFKD
TTYPISWFPN DDRVLLTQDN GGNELYHLFV REIDGTITDL TDSENTRANF VNFTNDGEFF
YATTNERDPK FMDLYRYDAK TYKRTLVFKN ELGFEISEVS PDGYFLSLAK THTNRDSDTY
LLDFRKRTLK PTLISEHQDP ANYSPMTFSS DSQFLYYSTD AKGEFAQVWQ YDIASGEHVL
AVKDDWNVSF VYFSESGKYR VSGVNADAST RISILDTESG KKVSLPQLPG GDLRSVNFSK
DESTLSFYIN SDTSPSNLFV WKMDSESAKQ LTQALNPKIN PQDLVASEVV RFKSFDGLEV
PGLLFKPKGA SADNKRPAVV FVHGGPGGQS RTGYSAMRQH LINHGYAVFA VNNRGSSGYG
KTFFHLDDKN HGENDLQDIV YGKRYLQGLD WVDADKIGIM GGSYGGYMTA AALAFEPEEF
KVGIDIFGVT NWVRTLESIP PWWESFKKAL YDEMGDPATD AERHRAISPL FHAQNITKPL
MVIQGANDPR VLKIESDELV EKVKQNGVPV EYVVFDDEGH GFSKKNNRIT ASEAYVKFLD
TYLKGDGSQL PGERVATK
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