| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0430 |
|---|
| Symbol | pdhR |
|---|
| ID | 5610073 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 522956 |
|---|
| End bp | 523708 |
|---|
| Gene Length | 753 bp |
|---|
| Protein Length | 250 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640931275 |
|---|
| Product | transcriptional regulator PdhR |
|---|
| Protein accession | YP_001472171 |
|---|
| Protein GI | 157373571 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2186] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.00096101 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCTTATA GCAAAATAAA CCAGCCAAAA ATTTCTGACG TCATCATGGG ACAGTTAGAA
CAGATGATCC TGGAAGGAAG TCTCCAGCCT GGTCAGAAAC TACCCCCTGA ACGCGAACTT
GCACTGCAGT TCGAAGTTTC CCGTCCCTCA TTACGAGAAG CCATTCAAAA GCTTGAAGCC
AAAGGTCTAC TCTTGCGTCG TCAAGGTGGT GGCACCTATG TCAAAGAGCA GCTTTGGCAG
AGCCTGGCAG ATCCTATCGT CGAGTTGATG CATAGTGACT CCGAGAGTCA GTATGATCTA
CTCGAGTTTC GTCATGCTAC CGAAGGCATG ATGGCATATT TTGCGGCGCT ACGTGGTACC
GACGCCGATA TGCAGAATAT CAAGCGCACG ATTATGGAAG TTGATGCTGC ATCTGAAATT
GAGCAGCAAG CGGAAGCTAT TGTAAAATTC TACCGTGCGG TCGCCGAAGC CTCTCATAAC
GTGGCTATGC TACACCTTGT CTTAAGTTTA GCCCCTGTGC TGCATAAAAA CGTGGCACAG
AACCTGGAGC TTCTGAACCG AAGAGAGGAA GCCTCCAAAA TGGCCAACGA TCATAGGCTG
GCCCTGCTTG CCGCCATCGT TCGCCGAGAT CCCGAAGCAG CTAGAGAAGC CTCTAATGAA
CACTTAAGTT ACATTGAGGA AGTCATGCTG TCTGTTAGGG AAGAAGATAG CCGGTTGCAG
CGTAGTCTGC GCCGTTTAAA AAGCGGTGTG TAA
|
|---|
| Protein sequence | MAYSKINQPK ISDVIMGQLE QMILEGSLQP GQKLPPEREL ALQFEVSRPS LREAIQKLEA
KGLLLRRQGG GTYVKEQLWQ SLADPIVELM HSDSESQYDL LEFRHATEGM MAYFAALRGT
DADMQNIKRT IMEVDAASEI EQQAEAIVKF YRAVAEASHN VAMLHLVLSL APVLHKNVAQ
NLELLNRREE ASKMANDHRL ALLAAIVRRD PEAAREASNE HLSYIEEVML SVREEDSRLQ
RSLRRLKSGV
|
|---|
| |