Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_0309 |
Symbol | |
ID | 5610001 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 361522 |
End bp | 362268 |
Gene Length | 747 bp |
Protein Length | 248 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640931141 |
Product | hypothetical protein |
Protein accession | YP_001472050 |
Protein GI | 157373450 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.0000000322809 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.000000114603 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGATAAAAC ATATCACCTT AGCCTTAGTG CTAACCCTAA GCTCCGTTGC CGGTCAGGCA CTTGCCGAAA CATTTACCGA AGCCGAATAT GTGGCCATTT TTAACGGTGA TAATATTAAT AAGCAGAAGC AAGCCATCGA CTCTCTGGTA CTGGCAGGTC TGTCGGATCC TAAGGTATTC GATACATTGC ACGCTAAATT TAAGGCGTCA CTGCCACAGG CCGTCAACAA CGCCAGCATC GATTACAGCG CCTGGCTACT TAAAGGGCTA GCCTACTCCG GAGATGAGAA GTACCTGCAA ACTTTCAACG AGATCATAGC AGGCGACTAC CCAGGTAAGC TGAAGAAGTA TGCAAAGAAG TCTATCCCGA CTCTTAAGCA GTATAAGAGC TGGACGCCTA TCCTAAGTGA CAAGAGCCAA TATGCAGCCT CTGAAACCCG AGAGGTAAAT GTGATTGCTA ATGCGCTGAG AAGTGATGAG TTAGAGTTAA AGCGTTACGC CGCCAAACGA ATGATCAATC ACTCACTGTA CGCTCCCTAT CTGTTATCGG TCTTAGACAG TGAACTCAAG GATCCACGCC TGCTCAAGCA TGAAAAGCTC GCAATTAACA CTTATGCCTA CATGGCAAAG GCGCTGGCAA GCTCGGGAGA GCCGGAGTAC AAGGCCACTC TGGAGCATAT CGCAAAGCAA AGCTCAGAGA GAAAGTTACA AAAATACGCA AAGAAGTACC TGAAAACCTA CTATTGA
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Protein sequence | MIKHITLALV LTLSSVAGQA LAETFTEAEY VAIFNGDNIN KQKQAIDSLV LAGLSDPKVF DTLHAKFKAS LPQAVNNASI DYSAWLLKGL AYSGDEKYLQ TFNEIIAGDY PGKLKKYAKK SIPTLKQYKS WTPILSDKSQ YAASETREVN VIANALRSDE LELKRYAAKR MINHSLYAPY LLSVLDSELK DPRLLKHEKL AINTYAYMAK ALASSGEPEY KATLEHIAKQ SSERKLQKYA KKYLKTYY
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