| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0253 |
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| Symbol | |
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| ID | 5609692 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 286268 |
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| End bp | 287230 |
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| Gene Length | 963 bp |
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| Protein Length | 320 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640931079 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_001471994 |
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| Protein GI | 157373394 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATCTTG ATAACCTGGC TAGAATCGAT CTGAACCTGC TGGTGATCCT GCAAGTACTA
CTCGAGGAAC AAAGTGTCAC CCGAGCAGCC AGTCGACTCC ACCTGAGTCA GTCGGCACTG
AGTAAGAGCC TCAACCGGTT ACGGGATACC TTAGATGACC CACTTTTTAT TCGTACCGCT
CATGGGTTAA AGCCGACTGC TCACGCAGTA CAACTCAGCG ATAAACTGCC AAGCCTACTG
GAAAATCTAT CACAACTGAC TCAGCCGCCC ACTTTTACTC CTGCGAGCAG CGATCGCAAA
TTCTCTTTTG CTATGGTCGA GAGTGCCTAT GAGACTCTAC TTCCCTACTT TATCGGGCCA
TTGCTAAGCA ATGCGCCTAA CTTAAGGCTG GATAGCTATG GTTGGATGGG GAAATCGATA
CAAGATCTGC AAAAAGGTCA GGTAGATTTT GGCATTGCCG GGCGCGATCT CCACCCCAAA
TCAAACGTTC ATATGGATCG CCTACCTGAT GGCATTGCCC ATCAGTTACT TTTTACCGAT
CATCAAATAT GTCTGGTCAG AGAGGAGCAC CCCATCCTCT CTGCCATCAC GACAGGCAAC
TGGAACCTGG ATATCTACCT AGAGATGTCA CATGTACAAG TTCGTTGCGA AGGGAATGAA
TGGTGGGCTT TAGATTATCA TCTGGCAGAG CAAGGTCATA GGCGGCGACT TAGCACAACC
GTTCCTGATT TTTATGGGGC TGCAAGTGTC TGTGCCCACA GCGATCTGAT CTTTACCGTA
CCCTCAAGCT TTGCTCGTCA CGCTAAAAAG TTATACCCAT TGGTTGAGCT ACCGCTACCT
TTTGACTTTA TCCCTTTAGC CTATGTACTC CTGTGGCATG AACGTAATAA TGACGAACCC
GGACACAGGT GGATGCGAGA AACCATCTGC AAGAGTGTTG CCGATGCGTT TAGTAATATT
TAG
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| Protein sequence | MNLDNLARID LNLLVILQVL LEEQSVTRAA SRLHLSQSAL SKSLNRLRDT LDDPLFIRTA
HGLKPTAHAV QLSDKLPSLL ENLSQLTQPP TFTPASSDRK FSFAMVESAY ETLLPYFIGP
LLSNAPNLRL DSYGWMGKSI QDLQKGQVDF GIAGRDLHPK SNVHMDRLPD GIAHQLLFTD
HQICLVREEH PILSAITTGN WNLDIYLEMS HVQVRCEGNE WWALDYHLAE QGHRRRLSTT
VPDFYGAASV CAHSDLIFTV PSSFARHAKK LYPLVELPLP FDFIPLAYVL LWHERNNDEP
GHRWMRETIC KSVADAFSNI
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