| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0180 |
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| Symbol | |
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| ID | 5610771 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 206370 |
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| End bp | 207707 |
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| Gene Length | 1338 bp |
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| Protein Length | 445 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640931006 |
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| Product | MATE efflux family protein |
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| Protein accession | YP_001471921 |
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| Protein GI | 157373321 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 46 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACTCCAG TCGAATTACT CCGCAACAGA CAGAAGAACA GACAGTTATT AGCACTCGCC
CTACCTATGA TATTGTCAAA TATCACAGTC CCCTTACTGG GGTTGGTAGA TACTGCTGTG
GTGGGTCATT TAAGTAACGC CTATTATTTA GGAGGAGTGG CTGTTGGCTC TACAATCATC
ACCCTCATTC TTTGGATGCT CGGTTTTCTT CGAATGGCGA CAACAGGCTT AGTCGCTCAA
TCCTTTGGTG CCGGCGATAC ACAAGCACAA TACAAACTCT TACTTCAAGC GGGTAGTCTA
GCGCTCATTT TAGGGTTAAG TGCCATAGTA CTGCAACTCC CCATCTTAAA TGGGGCCTTA
ATGCTCACCG ACGCAACGGC TGAAGTCGAA CGATATTGTC GTGAGTATTT TCAGATACGA
ATTTGGTCAA CGCCCTTCGC CCTGCTCAAC CTAGTACTCT TAGGCTGGCT GCTTGGACGG
CAACAACCTA AAGCGGCGAT GTGGCAACTG ATCGTAGCAA ACACCGTTAA TATAGCACTG
GATCTACTTT TTGTTCTCGG TTTAGATTGG GGAGTAAAAG GTGCCGCTCT CGCTTCGGTA
TTTGCCGATA TCTCTGGTTT TTTAGTCGCC TTAATGATGG TCTATAAGCA AGTTCAAAAA
ACTGGGGGAT TCGACCTTTT CAAGCTCAGC AAAACGCTTA GCCTCACCAG CTACCATCAA
CTGCTCAGCC TTAATGCCGA TATTTTTATC CGAAGCTTAT GCCTGCAAAT CGCCTTTGCC
TTCATGACAT TTCAAGGCGC GGGTCTGGGA GATAATACCG TCGCGGCCAA TGCCGTACTC
CTTAACCTCC TGCTTTTGAT CTCCTATGCT CTGGATGGTA TCGCTTATTA TGCAGAAGCC
GAAGTGGGAA GGGCCTATGG CCAGAGGAAT AAAGCGTTAA TGCGAGACAG CGTCACGTTA
GCCTGGCTCT GGTCTGGCAT CTCAGCAATC CTGTTCACCC TACTCTTCGC CTTCGGTGGA
GGGGCCATCA TTAACCTGCT AACAAGTATT GAAGCTGTAC GACTCGTCGC CGAACAATAC
CTGTTTTGGA TCATCATCTT GCCCCTTCTC TCATTCGGCT CTTACCTTTT CGATGGTGTC
TACATAGGTG CAGCTATGGG GAAAGTGATG CGAAACAGCA TGATCATCTC GACCTTTGGG
GTGTTCTTTC CCATCTGGTA TCTCCTGCAA GATATGGGTA ATCATGCACT ATGGGCCGCG
ATGAGTGCCT TCATGTTAGC GAGAAGCATG ACATTGACGC TGCATTATCG ATATCGGTTG
AGGAATAAAG GGTTCTAG
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| Protein sequence | MTPVELLRNR QKNRQLLALA LPMILSNITV PLLGLVDTAV VGHLSNAYYL GGVAVGSTII
TLILWMLGFL RMATTGLVAQ SFGAGDTQAQ YKLLLQAGSL ALILGLSAIV LQLPILNGAL
MLTDATAEVE RYCREYFQIR IWSTPFALLN LVLLGWLLGR QQPKAAMWQL IVANTVNIAL
DLLFVLGLDW GVKGAALASV FADISGFLVA LMMVYKQVQK TGGFDLFKLS KTLSLTSYHQ
LLSLNADIFI RSLCLQIAFA FMTFQGAGLG DNTVAANAVL LNLLLLISYA LDGIAYYAEA
EVGRAYGQRN KALMRDSVTL AWLWSGISAI LFTLLFAFGG GAIINLLTSI EAVRLVAEQY
LFWIIILPLL SFGSYLFDGV YIGAAMGKVM RNSMIISTFG VFFPIWYLLQ DMGNHALWAA
MSAFMLARSM TLTLHYRYRL RNKGF
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