| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0088 |
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| Symbol | |
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| ID | 5613405 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 97042 |
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| End bp | 98034 |
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| Gene Length | 993 bp |
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| Protein Length | 330 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640930914 |
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| Product | lysophospholipase |
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| Protein accession | YP_001471829 |
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| Protein GI | 157373229 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG2267] Lysophospholipase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.0146319 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGATAG CCCTCGAGCC ACAAGCTAAT ATTCAAAACG ATGCCCCCGG AATGAGTTTC
TCATCCGAGC GAAACCTTGA CTCAACAGAG CAACAGACAA TGTGGTCACA GGTTACTGAA
TCGGTCATCA AAATTGATGA TATCAGCTTA GCTTATTCGT TTATCGAGCA TCCAAAAAGC
CAGAAAGCCA TAGTGATCAG CAGTGGCCGG ATCGAGTCAT ACATTAAATA CCGGGAACTT
ATCTTCGATC TCTATCGCCA GGGCTATAGC ATCTACGCCC TTGATCATCG CGGACAAGGC
CTGTCGAGCA GAACCACAAA CAATCCCCAA CAGGGACATA TAGACAGATT CGAGACCTAT
ATTGATGACT TTACTCACTT TATAGATGTC GTCGTTAAGA AAAAAAATTA TAAGGACCTA
TTTCTGGTGG GTCACTCTAT GGGGGGTACC ATAGGCACCC TCTACATGGA GAAGCACCCA
GATACCTTCA GGGCTGCCGC CTTTTCAGCC CCCATGTACG GCATCAAGTT GCCCATAAGT
CGCCGATTTA TCCGCTGGCT GGCGCAGTTG CTCGACACCA CAGATTCAGA CAAAGGGCCT
AACTATGTGC TGGGGGGAGG TGACTATGAA GCCGTTGAGT TTGCCAAAAA TGACCTGACT
AACTGCCAAC TTCGCTATGA CAATTACAAG AAGTTGTACC TACAACACCC ACAGGTGCAG
GTGGGCTCAC CGACCAACCG CTGGTTACAT GAGTCTATCG ATGCGGCTGA GCGGGCAATC
TCAGCGGCAC GGAATAGCCA GATGCCCATC CTAATCCTCC AGGCCGATGA GGACACGGTT
GTCGATAACT TCGCTCAATA TCACGCCGTT GGCGGACTCT GCCAACTCAT TAATATTCCC
CATGCACGTC ATGAGGTTTT TATGGAGCAG GATGAGAGCA GAAATATGGC ATTAACTGAA
CTGGTTAACT TCCTACAGGC CCATGCTTCT TAA
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| Protein sequence | MSIALEPQAN IQNDAPGMSF SSERNLDSTE QQTMWSQVTE SVIKIDDISL AYSFIEHPKS
QKAIVISSGR IESYIKYREL IFDLYRQGYS IYALDHRGQG LSSRTTNNPQ QGHIDRFETY
IDDFTHFIDV VVKKKNYKDL FLVGHSMGGT IGTLYMEKHP DTFRAAAFSA PMYGIKLPIS
RRFIRWLAQL LDTTDSDKGP NYVLGGGDYE AVEFAKNDLT NCQLRYDNYK KLYLQHPQVQ
VGSPTNRWLH ESIDAAERAI SAARNSQMPI LILQADEDTV VDNFAQYHAV GGLCQLINIP
HARHEVFMEQ DESRNMALTE LVNFLQAHAS
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