| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0078 |
|---|
| Symbol | |
|---|
| ID | 5613483 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 86938 |
|---|
| End bp | 87276 |
|---|
| Gene Length | 339 bp |
|---|
| Protein Length | 112 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640930904 |
|---|
| Product | flagellar hook-basal body complex subunit FliE |
|---|
| Protein accession | YP_001471819 |
|---|
| Protein GI | 157373219 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1677] Flagellar hook-basal body protein |
|---|
| TIGRFAM ID | [TIGR00205] flagellar hook-basal body complex protein FliE |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCAAATT CAACCTTAGT CAACCCTCAG TCCATGATGG ACACCTTGAG TATCCACTCT
GAGATGGCTA AAGGGGCGAT AAAAATAACT CCTAATCCTA AAGATCATGG CTTACAGCCA
GCTTCATTTA CTGAACTTAT GGAGAGTAAA GTTGCGGCAG TGAATTTAGA TCAGAATACC
TCATCGGCTT TGATGAGAGC CGTGGACAGT GGCGAAAGTG ACGATCTTGT AGGAGCCATG
GTGGCATCGC AAAAAGCCAG CCTCTCCTTT TCAACCATGA TCCAGATCCG TAATCGCTTA
GTTCAGGCCT TTGATGAAGT GATGAAAATG CCACTGTAG
|
|---|
| Protein sequence | MSNSTLVNPQ SMMDTLSIHS EMAKGAIKIT PNPKDHGLQP ASFTELMESK VAAVNLDQNT
SSALMRAVDS GESDDLVGAM VASQKASLSF STMIQIRNRL VQAFDEVMKM PL
|
|---|
| |