| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VIBHAR_01948 |
|---|
| Symbol | |
|---|
| ID | 5553295 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio harveyi ATCC BAA-1116 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009783 |
|---|
| Strand | - |
|---|
| Start bp | 1953256 |
|---|
| End bp | 1954491 |
|---|
| Gene Length | 1236 bp |
|---|
| Protein Length | 411 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640907435 |
|---|
| Product | integrase |
|---|
| Protein accession | YP_001445140 |
|---|
| Protein GI | 156974233 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACACAC CTGAAGGTGT AGAGATCCGC GGTAAGTCTA TCCGTATTAG TTTTACTTAC
CGCGAGATGC GTTGTCGAGA GACACTGAAA GGCTGGGAAG TCACCAAAGG TAATCTCAAA
AAAGCGAGTC AGCTTCGCGC TTCTATACTT TCTGAAATTT CATTAGGCAC ATTTGATTAC
TTATCTCGTT TCCCAACTTC AAAAAAAGCA CAGCTCTTTG CAACACCAGA ACAGAGAGGT
AAGAACCTTA CCGTTCGCGA ATTGTTTGAT GACTACATTC AATTGAAAAA GACAACAATG
GCCTCACAGT CACTCTATGT TTTAAATAAT ACTGCGAGAG CATGCTGCTT GTTTATTGGT
GAGGAACGTA CTATCTCCAA CATCACGATT ATGGATGCCC TAAAGTGCCA AAAGTTAATG
GTCGACTCCC CTACTCGCAA TGGAAGACCA CGAAGCGCAA AGACGATCAA TAATATGATC
AAACTTATGC GCCGATGCTT TGACTTAGCA GTCAAATCAA AATTTATCGA TGACAACCCA
TTTCTGCATG TTGAGTTACT AAGTGGTGGC TCTGGTGAAC CGGATCCACT AGAACTAGAA
GAGTTCCACC AGCTAATAGA ATCAACGACA AACTTACAGC AGCGGAATAT ATTCACCTTA
GCCATTTACA CCGGCATGCG GACTGGTGAG CTCTGTGCGT TAGCATGGGA AGACGTCGAT
CTTGAGAAAG GTACGATCGA GGTTACTCGC AACGTCACGA TTGAGCGAAA GTTCACAACG
CCGAAGAATA AGAAGTCAGA GCGAACTATT CACTTACTTC AACCTGCTCT CCTTGCCCTT
AAGTCTCAAA GAAAGCTAAC TATGCTTGGC CCGGTTAGAG ATATTTTAGT GGAAGTAAAA
GGCTCAAACA CGTTTCGCCA GGAAAGTGTT CAATTCGTGT TTATCCCAGA ACATCGTAAT
GGCCAAGAAA CGAGTGAGAC CTATAAAACG ACAACATACA ATCGTCTATG GTCACGCGCA
CTTAAACGAG CAGGCATTCG TCATCGCTGT TCATATCAAT CTCGACACAC CTACGCTTGT
TGGTTGATCA CCAAAGGGGC AAACCTCTCT TTTATCGCTG AGCAGATGGG ACACAAGAGC
ACGATGATGT TGGAGCGCGT TTACGGCCGA TTCATGAAGT CACACTCGCA TGAACAGATA
GAATACTTGA ATGGCATTAT GGCTTCGAAT AAATAG
|
|---|
| Protein sequence | MNTPEGVEIR GKSIRISFTY REMRCRETLK GWEVTKGNLK KASQLRASIL SEISLGTFDY
LSRFPTSKKA QLFATPEQRG KNLTVRELFD DYIQLKKTTM ASQSLYVLNN TARACCLFIG
EERTISNITI MDALKCQKLM VDSPTRNGRP RSAKTINNMI KLMRRCFDLA VKSKFIDDNP
FLHVELLSGG SGEPDPLELE EFHQLIESTT NLQQRNIFTL AIYTGMRTGE LCALAWEDVD
LEKGTIEVTR NVTIERKFTT PKNKKSERTI HLLQPALLAL KSQRKLTMLG PVRDILVEVK
GSNTFRQESV QFVFIPEHRN GQETSETYKT TTYNRLWSRA LKRAGIRHRC SYQSRHTYAC
WLITKGANLS FIAEQMGHKS TMMLERVYGR FMKSHSHEQI EYLNGIMASN K
|
|---|
| |