Gene Rcas_4009 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_4009 
SymbolrpsE 
ID5541519 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp5217017 
End bp5217559 
Gene Length543 bp 
Protein Length180 aa 
Translation table11 
GC content63% 
IMG OID640896121 
Product30S ribosomal protein S5 
Protein accessionYP_001434060 
Protein GI156743931 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0098] Ribosomal protein S5 
TIGRFAM ID[TIGR01021] ribosomal protein S5, bacterial/organelle type 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value8.76107e-05 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value7.86108e-05 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
GTGATCAAGC GACGCATTCA TACGGATGAA CTTGAACTCG AAGAGCGCGT GGTGCAGATC 
AACCGCGTCT CGAAGGTGGT CAAGGGCGGG CGCCGCTTCA GTTTCAGCAC CGTCGTCGTG
GTTGGCGATG GGAAGGGGCA CGTCGGCATC GGCATGGGGA AAGCCGCCGA GGTGCCGGAG
GCGATCCGCA AGGGAGTGGA AGCAGCCAAA AAGAACCTGA TCCGGGTGCC GCTTGCTGGC
ACGACCATTC CGCACGAGGT GCAGGAAGAG TTCGCCGCAT CAAAGGTGCG CCTGCTCCCG
GCTGCCCCCG GCGCCGGCGT GATCGCCGGT CGTGGTGTGC GCCCGGTGCT CGAGATGGCC
GGCATCAAGG ATGTGCTCTC GAAACGCTAT GGCAGCAATA ATCCGATCAA CGTGGTGAAG
GCGACGTTCA AAGCGCTCAG TTCGTTGACA TCACTCGAAG AGCAGGCACG TATGCGCGGC
ATGACGCCAA GAGAACTGCA CCTGCGGCGC ATGCGTCGCG AGCCGGCGTC GCAGGAGGCT
TAA
 
Protein sequence
MIKRRIHTDE LELEERVVQI NRVSKVVKGG RRFSFSTVVV VGDGKGHVGI GMGKAAEVPE 
AIRKGVEAAK KNLIRVPLAG TTIPHEVQEE FAASKVRLLP AAPGAGVIAG RGVRPVLEMA
GIKDVLSKRY GSNNPINVVK ATFKALSSLT SLEEQARMRG MTPRELHLRR MRREPASQEA