| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_3908 |
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| Symbol | |
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| ID | 5541414 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 5110021 |
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| End bp | 5110839 |
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| Gene Length | 819 bp |
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| Protein Length | 272 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640896018 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001433961 |
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| Protein GI | 156743832 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.106718 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.186536 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATCCGG TGGGAAAAGT CGTCCTCGTG ACCGGCGCAT CGAGTGGTAT TGGCGCAGCG
ACTGCGCGCG CCCTCGTTTC TGCCGGAGCG CACGTTGTGC TGACCGCGCG TGATGCCGCT
CGCCTTAATG ACCTTGCCCG CCAGTTGAAG GGGCGCGCGC GCGCTATCCC TGTGGATGTC
GCCGATCCAA TTGGGGTAGA GCGCCTCGTC GCAGAAATTA TCGACTCCTA CCGGCGCATT
GACGTTGTCA TCAACAACGC AGGCGTCGGT CTGGCGTCGC CGGTGGCGCA ATTAAAGCCG
GACGACCTGC GCGCTGCACT GGATGTCAAC CTGTTCGGTC CGCTTTCTCT GACGCAGGCG
ACACTTCCTC ATATGCGAAA TGTCGGGCGG GGACAGATCA TTTTCGTTTC CTCGGTTGTC
GGGTTGCGGG CGCTGCCCTA CGCGGGCGGG TATGCGGCAA CCAAGGCGGC GCTCGACCGG
TTGAGCGAGG CGCTGCGGGT TGAGTTGCAC GGTAGTGGCA TCACGGTGAC GTTGGTGCGC
CCCGGAACGA CCCGTACTGC GTTCAACACG CGCCGTCTCG GCGTCCATGG TGATCTTCGT
CGCTTCAACC CACCCGGCAT TGCGCCCGAA TGCGTGGCAG AAACCATAGT GCGCGCTATC
CGCCGTGAAC CGCGCGTTGC CTATGTTACG TGGAGCGACC GCCTGGCGGT AGGAACGGCG
TTGCTGCTCC CACGACTGGC CGACTGGTTG CTGGCGCGTT TATTTGTCTG GAGAGGCTCT
GATGGGAAAG GTGTGCCGTA TGCGAATCCT GAGCGCTGA
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| Protein sequence | MDPVGKVVLV TGASSGIGAA TARALVSAGA HVVLTARDAA RLNDLARQLK GRARAIPVDV
ADPIGVERLV AEIIDSYRRI DVVINNAGVG LASPVAQLKP DDLRAALDVN LFGPLSLTQA
TLPHMRNVGR GQIIFVSSVV GLRALPYAGG YAATKAALDR LSEALRVELH GSGITVTLVR
PGTTRTAFNT RRLGVHGDLR RFNPPGIAPE CVAETIVRAI RREPRVAYVT WSDRLAVGTA
LLLPRLADWL LARLFVWRGS DGKGVPYANP ER
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