Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_1645 |
Symbol | |
ID | 5539121 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | + |
Start bp | 2123493 |
End bp | 2126213 |
Gene Length | 2721 bp |
Protein Length | 906 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640893782 |
Product | multi-sensor signal transduction histidine kinase |
Protein accession | YP_001431755 |
Protein GI | 156741626 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2205] Osmosensitive K+ channel histidine kinase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.884619 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.02986 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGTATCACT GTGCAATCTT TTCACACCCT ATGCTGACTC GCCGGTCTTT TCGTTTGACG ATACGCTCCA AAATGACATT GGTGGCGCTT GTGCTTGCGC TAGCGCCACT GATCTTCGTG AGTGCGCTCA GTCTTTCGGC GCTCGACCGC GCCCGCGGCA TTGCAGTGCA AACCGCGTCG GATGCCCTGC GCAAGCAAAC CGAAGAAGAC CTCGCGCGCT GGGTGACCGA CAAGGCGAAC CTCTACGACG CCAAACTGGA GCGCGTCTAT CAACAAGTTG AAACGATCGT CAGCTACCAA CCGTTAACGG GCGGCGGGGC GGATGCAAAC ACCGTCTCTG AACGTGTCTG GGTTGCGCCG GACGGTCCGA CGCCCGCAGC GCTACGCAAA CATGCCGATA CCATCGCACT CGCCCGTCGG TATATCCCGC TCCTGCGCGC ATCGGTCGAT CAGGAAGGGA TGGTGAGCCT GGCATATGTG GCTTTTGAAG ATGGCGGCGT GCTCGCTTTC GATCACGACA TCACCGATGT GCTGGACGCC ATCAAGCCGT TCGATCCGCG CAAGCGCAGC TGGTACATCG CTGCTCGTGA GGCGGGCAAG CCGGTATGGG TCGATACCTA TGTCGATGCC AATACCAAGA AACTGACGAC GACCTGCGCT GCGCCGCTTT ACGACCGGAA TGGCGCATTT GCCGGCGTTG TCGGGTTCGA TGTCTTACTG GAGACCATCC AGGAGGATAT CCTGGCGATC GATATTCCTC CCGGCGGATC GGCGTTCCTG ATCAATCAGC GGGGCGATGT GCTACTGCAC AACACACTGC TGAGCCGTCA GGGTCAATGG GATCAACCGA TTGCAACCGA CAATCTCTTG AACGACGCCA ATCCGCAGGT GCGCACCATT GCCGGGCGCA TGACGCGCGC GGAACAGGGG GTCGAACGCC TGACGCTTCA GGGTGAAGAG GTGTATCTGG CGTTTGCGCC GATCTCCAGC GCAGAATGGA GCGTCGGCAT CGTCATTCCC GTAGCCGAAG TCACTGGTCT GGCGCAGCAG GTGAGTGAAG TCATTTCTCT TCGCCAGGAA GTGCTCAGCG GGCAGATCGT CCTTGTCATC ATTCTGTGCG TGATTGTCGT CTCGGTGCTG AGCATGCCTG CGGCGTCGAT CCTGACGCGC CCCCTGCGCG AGTTGCAGGC GGCAGCACAG CGGGTCGCCG CCGGCGATCT GACGTATCGC GTCCCCGAGG CGGGTGATTA TGAAATCGCA CATGTCGGGC ATTCGTTCAA TACTATGACC GACGCGCTCC ACGAGAAGAT CAACGAACTG GAATTGAACC TGCGTCAACT GGCAGCATTG AACGAGATGT CGAATCAGTT TCGCACCATT GGGTCGGTGC GCGAACAACT CGACGCCATT CCCAAGGGGG TATGCGCGTG CCTGGGGTTT GAACGCGCCG TGCTCTACCT GATCGAACAA CGCCATCTCC GTGCAGTGAG CGCCTGGATC AACACAGGCG ATGCGGATCA GATCGCTCGT CTGCTGGCGG ATGCCGCGTC AATTCCGCTG GAAAGCGATA CGATGTCGGC AGATGTGGTG CGGAGCGGGC AGGCAGTGAT TATCAGCGAC GTGGCGCCGC ACAGCGCACC GGCCAATGCT GTGCAGGCGC CGCTGTTCGG ACGCGAGAAA CGGGTGATTG GCTTGCTCGT CGCCTCCTTC GATGCCGCAG GGCGCGCGCC GACGCCACGC GACGCTGCGC AGTTGATGAC CTTCGCCGGT ATGTCTGGTC TGGCGCTCGA AAATACGATG CTCTACGCTG GCCTCGAACG TCAGGTGGCG CAGCGCACAG CAGAATTGCG GGCCGCTCTG GCGCGCGCGC AGGAGGCCGA TCGTCTGAAG GGTCAATTCC TGGCAGCAGT ATCGCACGAA CTTCGCACGC CGCTCAATGC CATCATCGGG TTTTCGACCG TCATGCTCGA TGAGATCGAT GGTCCGATCA CGCCGTTGCA GCGTGAGGAC CTGAAGATTA TCAATCGGAA TGGTCGCTTC CTGCTGCACC TGATCGATGA GTTGCTCGAT CTGGCGCGGA TCGAAGCCGG AAAAATCGAC CTGGAACTTG CGCCCCTCGA TATGCGCGCC TTGATCGTCG AGGTGACGGA AACGGTGCAG GGACTGCTGC ACAACCGGCA GATCGCGCTC AATCTTTTGT TGCCTGAGCG TCTGCCATAT GCCTGTGGCG ACGCCGCCAG AATCCGCCAG GTGCTCCTCA ATTTGCTCTC AAATGCGGTG AAGTTCACGC CACAAGGGAG CATCACGGTA AGCGCTCGCT GTGTGGCCGC GCCCGAGAAT CATCCGGGAG CAACGGGTTC GGGCGCCGTC ATTGTGCGCA ATGGGCAGCG TCTGCATCCC TACATCGCAG TCAGCGTCCG CGATACCGGC ATCGGCATTG CGGCAGAAGA CCTGACACGC ATCTTCGAGG CGTTCAATCA GGTGCGCTCT GGCAACCGGC AGCATGGCAG CGGGTTAGGA CTGGCGATCA GTCGCCGTCT GATCGAGGCG CACGGTGGGC GTATCTGGGT GGAAAGCGAA CCTGGTAAGG GGAGCGTTTT CACATTTATC CTTCCATGCG CCATTGGAGT TCGCAGCGAT CATACCCGCA ACGCCGGCGT TGCGGGTGAG CAGGCTGTCC AGCATGTCGA AGTGCAAACC GCTCTTCTTG ATAATCGATG A
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Protein sequence | MYHCAIFSHP MLTRRSFRLT IRSKMTLVAL VLALAPLIFV SALSLSALDR ARGIAVQTAS DALRKQTEED LARWVTDKAN LYDAKLERVY QQVETIVSYQ PLTGGGADAN TVSERVWVAP DGPTPAALRK HADTIALARR YIPLLRASVD QEGMVSLAYV AFEDGGVLAF DHDITDVLDA IKPFDPRKRS WYIAAREAGK PVWVDTYVDA NTKKLTTTCA APLYDRNGAF AGVVGFDVLL ETIQEDILAI DIPPGGSAFL INQRGDVLLH NTLLSRQGQW DQPIATDNLL NDANPQVRTI AGRMTRAEQG VERLTLQGEE VYLAFAPISS AEWSVGIVIP VAEVTGLAQQ VSEVISLRQE VLSGQIVLVI ILCVIVVSVL SMPAASILTR PLRELQAAAQ RVAAGDLTYR VPEAGDYEIA HVGHSFNTMT DALHEKINEL ELNLRQLAAL NEMSNQFRTI GSVREQLDAI PKGVCACLGF ERAVLYLIEQ RHLRAVSAWI NTGDADQIAR LLADAASIPL ESDTMSADVV RSGQAVIISD VAPHSAPANA VQAPLFGREK RVIGLLVASF DAAGRAPTPR DAAQLMTFAG MSGLALENTM LYAGLERQVA QRTAELRAAL ARAQEADRLK GQFLAAVSHE LRTPLNAIIG FSTVMLDEID GPITPLQRED LKIINRNGRF LLHLIDELLD LARIEAGKID LELAPLDMRA LIVEVTETVQ GLLHNRQIAL NLLLPERLPY ACGDAARIRQ VLLNLLSNAV KFTPQGSITV SARCVAAPEN HPGATGSGAV IVRNGQRLHP YIAVSVRDTG IGIAAEDLTR IFEAFNQVRS GNRQHGSGLG LAISRRLIEA HGGRIWVESE PGKGSVFTFI LPCAIGVRSD HTRNAGVAGE QAVQHVEVQT ALLDNR
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