| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_1355 |
|---|
| Symbol | |
|---|
| ID | 5538827 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 1734503 |
|---|
| End bp | 1735195 |
|---|
| Gene Length | 693 bp |
|---|
| Protein Length | 230 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640893492 |
|---|
| Product | two component LuxR family transcriptional regulator |
|---|
| Protein accession | YP_001431469 |
|---|
| Protein GI | 156741340 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGTTCA ACCCGACTGC TGGAAGTTCA TCGCCATCTA CGCGTGTCCT GATCGTGGAC
GATCACGAAC TGGCGCGCGC CGGGCTTGCA GCGGTGCTGG CATGCGAACC AGGCATCGAG
GTCGTCGGCG AAGCGGACAA CGGCGCCGCT GCGCTCGATT TCGTGGCGCG CCATCCGGTG
GACCTGGTGA TGATGGATTT GCAGATGCCC GTGATAGATG GCATCGAGGC GACGCGACGG
ATCAAGGCGT TGCATCCCGC CATCGGCATC ATTATGGTCA CCGTGCAGGC AAAACCGGAC
GCGCTGATGG AAGCGTTGCG CGCCGGCGTC GCCGGGTACC TGCTCAAGGA CGCGAGCCGA
CGTGAGATCA TCGGCGCGGT GCGGCAGGTG TTGCGCGGCG AGGCGTTCCT GAACCCAGAT
CTGGTGCTGC AAACGCTGCG TCGGCTGGCG CATGCGACGC CAACCGATGA CGCGACGCCA
ATCGAGCCGC TAACGCCCCG CGAGCAACAG GTGTTGCGCC TGCTGATGCA GGGTAAAACA
AACCGGGAGA TCGCTCGCGA ACTGATCATC AGTCCAGGAA CGGTCAAGGT GCATGTCGAG
CATATCATTG CGAAACTCGG CGTGTCGGAC CGCACACAGG CGGCGGTGCG GGCGTTGGAG
TTGGGGTTGG TGAGGGATAA GGGAAGAGAT TAG
|
|---|
| Protein sequence | MTFNPTAGSS SPSTRVLIVD DHELARAGLA AVLACEPGIE VVGEADNGAA ALDFVARHPV
DLVMMDLQMP VIDGIEATRR IKALHPAIGI IMVTVQAKPD ALMEALRAGV AGYLLKDASR
REIIGAVRQV LRGEAFLNPD LVLQTLRRLA HATPTDDATP IEPLTPREQQ VLRLLMQGKT
NREIARELII SPGTVKVHVE HIIAKLGVSD RTQAAVRALE LGLVRDKGRD
|
|---|
| |