Gene Rcas_0813 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRcas_0813 
Symbol 
ID5538279 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus castenholzii DSM 13941 
KingdomBacteria 
Replicon accessionNC_009767 
Strand
Start bp1069540 
End bp1070145 
Gene Length606 bp 
Protein Length201 aa 
Translation table11 
GC content60% 
IMG OID640892965 
Producthypothetical protein 
Protein accessionYP_001430948 
Protein GI156740819 
COG category[S] Function unknown 
COG ID[COG4636] Uncharacterized protein conserved in cyanobacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00107511 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGACTGTAT CAGACCTCCG CGACACTCTT CCCGTCGTTG CCGTCGCCAC ACCGATGATC 
GGACCACCGC AGGGTCGCTG GACATACGCC GACTATGCGG CGCTGCCGGA AGACGGAAAC
CGCTACGAGA TCATTGCGGG AGTGCTCTAC ATGATGCTGG CGCCAGAAAT TGAACATCAG
ATGACCAGCA ATCGTATGGC AACATTTCTG ACGATCCACA TCCAATTTAC CGGTCTTGGC
GCGGTTCTGA CTGTGCCCAC TGATGTCGAA CTGGCGCTCG ACACTGTGGT TCAGCCCGAT
ATTGTCGTTG TTCTGAGCGC CAATCTCGGC ATTATCACCC GTAGTCGCAT CATTGGCGCG
CCCGATCTGG TTGTGGAAAT CCTCTCCCCC GGCACAGCGG GGTATGATCG GCGCGAGAAG
CAGGATGCGT ATGCGCGCGC TGGCGTGCAT GACTATTGGG TTGTTGATCC GGCGGCGCAG
ACTGTGGAGG TGCTTACTCT GGATCGGAGC GCCTACCGCT CGCGCGGCGT CTTTCGCGGG
CAGGCGCGCT TACCGTCGCA GACGGCGCCG TTGCCGATTC CGGTCGAGCG GTTCTTTCAG
GAGTGA
 
Protein sequence
MTVSDLRDTL PVVAVATPMI GPPQGRWTYA DYAALPEDGN RYEIIAGVLY MMLAPEIEHQ 
MTSNRMATFL TIHIQFTGLG AVLTVPTDVE LALDTVVQPD IVVVLSANLG IITRSRIIGA
PDLVVEILSP GTAGYDRREK QDAYARAGVH DYWVVDPAAQ TVEVLTLDRS AYRSRGVFRG
QARLPSQTAP LPIPVERFFQ E