Gene Rcas_0060 details

Gene Information

• Locus tag: Rcas_0060
• ID: 5537518
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Roseiflexus castenholzii DSM 13941
• Kingdom: Bacteria
• Replicon accession: NC_009767
• Strand: -
• Start bp: 72281
• End bp: 75718
• Gene Length: 3438 bp
• Protein Length: 1145 aa
• Translation table: 11
• GC content: 63%
• IMG OID: 640892225
• Product: transcriptional activator domain-containing protein
• Protein accession: YP_001430216
• Protein GI: 156740087
• COG category: [K] Transcription
• COG ID: [COG2909] ATP-dependent transcriptional regulator

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 22
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCGTACAC TCAACCACAG CATCGAATCC AGCAGTCAAA GCCGTGGCGC GCAGGCGCTC 
TTGCCGCTCA AACTGCTTCC CCCGCCCCTG CGCGATGGGG TGCTGCTTCG TCCCGATCTC 
CAGGCATTGT TGGCAGAAGT GCGGTTGCAG CCGCTGACTC TTGTGGTAGC GCCGGCCGGG 
TATGGCAAAA CAACGCTGAT TGCGCAATGG GCGCAAGAAT TGGGACGCAC CGGCGCGCCG 
GTCTCCTGGT TGACGCTCGA TGTCGGTGAA CGCGACCCGG CATTGTTTCT GGCGTACCTG 
ATCCGCGCGT TTCAGTCGGC TTTTCCCGTC CTCGGACAGG ATGCGGCGCG GGTGCTGTCG 
AGCGCTGCGA ATCTCGAACG TGACTGGCCC CTGGTTGCCG GGGCGCTGTG CAGCGATTTG 
CAGCGTCATG TGCTGTCGGC AGCCTTTCTG TTCCTCGATG ATCTGCATCA GGTGATCGAC 
TCGTCCGTCA TTGGGCAGAT TCTCGGCTAC CTCCTGCGCG CCGCGCCGCC TTCCCTGCAT 
GTGGTGATTG CATCACGGCG CGAGGTGACC ATTCCGCCGC TGGCGCGCCT GCGCATGGAG 
GGGCGGGTTG TCGATGTGCG CCAGTCTGAT CTTCATCTGA ACCTGGAGCA GGCGCGCCAG 
TTGCTCGCCA TTCAGGGTGT GGCGCTCTCG GATGAGGAAC TCACGATGCT GCTGGCGCGC 
ACCGAAGGGT GGGCGTTGAG CCTGCAACTT GCTGCCCGTG TGCTTGCGGA ACAGCCGGTT 
GAGCGCCGTA GCGAGTTTGT AGCCGCATTG GGCGGTGGAA GTGAGCAATT GCTGGCGTAT 
CTTGCGACTG AGGTGCTCGC CGATCTTCCC GCAGATGTGC TCGAGTTTCT CCGCCTGGCT 
GCGCTTCCGC CCCATTTCGA CGCCGATCTG CTGGCGGATG CGCTGTTGCG GGAAGATGTC 
CCGTACCTGT TGCGTCGTGT TCGCGCCCTG GGTCTGCCGC TGACGCCGAT CGATGCGCAG 
GGTGATCGCT TACGTTTTCA TCCGCTCTGG CGCGAATTGC TGGTGCGCGA TATTCACGAG 
ATCGTGGACG ATGAAACGCT TGCTGCATTC CATCGTCGTT TCGGTCGGCA GTTCGAGCTT 
CGCGGCGAAC TCGAAGAAGC GCTCGATCAT TATGCCCGCG CCAACAGCAT CGACGATCTC 
GAACGCGCTC TGCTCGAACG CGCCTGGCCC CTGCTCAATT CGCCGCGCCG TGATACTGTG 
CGGCGCTGGA TTGAACAGAT ACCGGCAGAA CGGCGCGATA CCAACCCCGA ATTACTGTAT 
ATGTGGGGGT ACAGCCTGAT CGTCGCCAAT CCGCCGCTTG CAGCGCAGGT GATCGAGCGC 
GCTGCCGACC TGTTCCGCCG GGCAGAGGCG CATGCGCGCG AATTGCGCGC GTACTCCGAT 
CTGGCAGCGC TCCTCTTCTG GCAGGCGCGG CCTGCCGATT TCGCCGCTGT GTGTGTGCGC 
GCCATCCGTG CTGCCAATCA GGCGCGTGAT GCCTGGTCGC GCGGCGCAGC GCTGACGTGC 
GCTGCCGCCA TGCTGTCAAT TCGCGGGCGC CTCTCTGCTG CGCTTCGGGT TGCGCGCCAT 
GCCACTGCGC ATCCCCTCAA TCCGGCGTGG CACTGGTTGC TGGCAATGAT CGTCACGTCG 
ATCCACAATC AGCTTGGGCG CCCCGCTGAT GCGCTGGCAG TCGTCGATGA AGCTCTCCAA 
CTGACGCAGA TCGACAGCAA CGACCGCATG CGACAGAATC TCCTGCGTCA GCGGGCGATG 
GCGCTCTATC TGCTCGGCCA GCACACTGAG GCGATTGCTC TGGCGCTGGA CGCTCATCGT 
TACCTGTTGG ACTACTATCG TGACGGCACG GCTGGCGTGA GCGCTGCACA ACTGGCGTTG 
CTTCTCTCAT TGCAGGGGCG TCTCGATGAA GCGGCGATCT ACATTGCGCA GGCGCGCGCC 
GCCTTTCATG ACCTTGGCGC GCTGGCGCCG CTCGCGTCGT TGCAAGCCAT CGAACTGTAC 
AGTATGCTGC GGCGTGGTCA GGCGGCGCGC GCCGCCGCCG CCGCCGCCGC GTTTGTGCGC 
CGGCTCGATG AGGTGGAAGG CATTGCGCCT GATCTGCGTC TGCGCCTCCT GCTTGCTATT 
GTGCTCGGTG AGGCGGGTGA GCGCCGCCAG GCGCTCGACG TGCTGAAAAC GACCGTTCAA 
CAGATGCAGC ATCGTGGCTA TCGGCTGTTT CTGGCGTCCG CCTGCCTCTA TGGGGCGTAT 
CTTGCCGGGA CGTGCAGTGA AGCGGAGTTG CGCGATGTCT GGCTCCGTGT CGGATGGACC 
ATTGCCGGAG AGGATCGCTG CCGTTTCCTC CCCATGATGC CTGCCGAAGC CTTGAGAGAT 
GTGGCAGCGG CGGCGTTGCG CGCTGGGATT GGCGGAGACG CACCTGGACG TGTTCTATCG 
CATCATCTCG GCAATGAGAC GGTGGAACTC TTGCAGGACA TGTTGAGCGA CTCGTCGCCA 
GAGGTGCGTG CGCGGGCGGC GCGGTTGCTT GGCGATGTTG GCACGGCAGC CGCCTATCCA 
GTATTGCGCG CGTTGATCAA GGATCGCAAT CCGGCGGTGC GCCAGATCGC CGAAGAGTCG 
CTCAACCGCC TGGTGTATCG CCCTCCATAC GTGTTGCGCA TTCGTATGCT TGGCGCCTTC 
ACCGTCTGGC GGGGCGACCA CGAGATTCGT GACCGTGAAT GGCGCAGCAG CAAGGCGCGC 
CAGTTGTTGC AGTTGCTGCT GACCGAACGC GGACGATCCC TTTCGCGCGA ACAGGTCGTT 
GATGCGCTCT GGCCCGATAT GGAGATCGAC GCAGCGACCA ATAATTTGCG TGTCACGATC 
AATCGTTTGA GCAAGGCGCT TGAGCCTGAT CGCCCCGACG GCGCGCCATC TGCTTTTTTG 
GTGCAGCAGG GTGACACGTA TGCCTTCAAT ACCGCCAGCG ATCACCGGAT CGATGTTGTT 
GAGTTCGTCG ATGCGATTGC TGAAGGACGC CACGCCGATC AGCGTGGTCA GCGCGCCACA 
GCCATCGCGG CCTACCGGCG CGCGGTTCAG TTGTATGGCG GTCCCTATCT GCCGGATACC 
ATGTACGAAG ACTGGACGGT CGTCGAACGT GAACGGCTGG CGCTGGCATT CATCGAGGCG 
GCGCTTCGCC TGGGCGCGCT TCTCCTCGAG GAAGGCGCCG TTCACGAGGC GATAGGGTTG 
GGATGGCGCG TCATCGAGAT CGATCAAACC CAGGAAGAAG CGTACCGCCT GCTGATGCGC 
GCGCACGCTG CGCTCGGTGA GCGCAGCACA GCGCTGCGCC TGTATACGCG GTGCGTTAGT 
GTGTTACAGA ATGAATTGGG CATCACGCCA TTGCCCGAAA CGACCGCGCT CTACCAGACG 
CTGCGCGACC TCCGGTAG 

 

Protein sequence

MRTLNHSIES SSQSRGAQAL LPLKLLPPPL RDGVLLRPDL QALLAEVRLQ PLTLVVAPAG 
YGKTTLIAQW AQELGRTGAP VSWLTLDVGE RDPALFLAYL IRAFQSAFPV LGQDAARVLS 
SAANLERDWP LVAGALCSDL QRHVLSAAFL FLDDLHQVID SSVIGQILGY LLRAAPPSLH 
VVIASRREVT IPPLARLRME GRVVDVRQSD LHLNLEQARQ LLAIQGVALS DEELTMLLAR 
TEGWALSLQL AARVLAEQPV ERRSEFVAAL GGGSEQLLAY LATEVLADLP ADVLEFLRLA 
ALPPHFDADL LADALLREDV PYLLRRVRAL GLPLTPIDAQ GDRLRFHPLW RELLVRDIHE 
IVDDETLAAF HRRFGRQFEL RGELEEALDH YARANSIDDL ERALLERAWP LLNSPRRDTV 
RRWIEQIPAE RRDTNPELLY MWGYSLIVAN PPLAAQVIER AADLFRRAEA HARELRAYSD 
LAALLFWQAR PADFAAVCVR AIRAANQARD AWSRGAALTC AAAMLSIRGR LSAALRVARH 
ATAHPLNPAW HWLLAMIVTS IHNQLGRPAD ALAVVDEALQ LTQIDSNDRM RQNLLRQRAM 
ALYLLGQHTE AIALALDAHR YLLDYYRDGT AGVSAAQLAL LLSLQGRLDE AAIYIAQARA 
AFHDLGALAP LASLQAIELY SMLRRGQAAR AAAAAAAFVR RLDEVEGIAP DLRLRLLLAI 
VLGEAGERRQ ALDVLKTTVQ QMQHRGYRLF LASACLYGAY LAGTCSEAEL RDVWLRVGWT 
IAGEDRCRFL PMMPAEALRD VAAAALRAGI GGDAPGRVLS HHLGNETVEL LQDMLSDSSP 
EVRARAARLL GDVGTAAAYP VLRALIKDRN PAVRQIAEES LNRLVYRPPY VLRIRMLGAF 
TVWRGDHEIR DREWRSSKAR QLLQLLLTER GRSLSREQVV DALWPDMEID AATNNLRVTI 
NRLSKALEPD RPDGAPSAFL VQQGDTYAFN TASDHRIDVV EFVDAIAEGR HADQRGQRAT 
AIAAYRRAVQ LYGGPYLPDT MYEDWTVVER ERLALAFIEA ALRLGALLLE EGAVHEAIGL 
GWRVIEIDQT QEEAYRLLMR AHAALGERST ALRLYTRCVS VLQNELGITP LPETTALYQT 
LRDLR