| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0047 |
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| Symbol | |
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| ID | 5537505 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | - |
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| Start bp | 62261 |
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| End bp | 63205 |
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| Gene Length | 945 bp |
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| Protein Length | 314 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640892212 |
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| Product | integrase family protein |
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| Protein accession | YP_001430203 |
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| Protein GI | 156740074 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4974] Site-specific recombinase XerD |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.456307 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGAAC AGGTCGAAGC GTTTCTGCGC CATCTTGCGG ATGAACGCAA TCTTTCCGCC
AATACGATAG CAGCGTATCG CACGGATCTG GAGCAGTTTT GTGAGTTTCT GCACGGGAGG
CGTCTGTTCG CATGGCACGA TGTAACGCAC GATGATGTGC TCGCGTTTCT GATCGATCTT
CGTGAACGTC GATACGCCTC CTCGACTGTG GCGCGCAGAG TCGCTGCGGT GAAGTCGTTC
TTTACGTTTC TGACCGGGCG TGGGATTGTG CAGCGCGACC CTACCGAGCG TATCGACTCG
CCAAAGGTTG ATCGCGATCT GCCGCGCGCT CTGACGCCGC GCCAGGTCGA TGAATTGCTG
GAATTGCCGT TGCGCTCGCC AACGCCAGAG CGCATCCGCG ATAAGGCGAT GCTCGAATTG
CTCTATGCTA CCGGTGTGCG CGTGAGCGAA TTGGTGGCAT TGAATGTGAA CGACGTCGAT
CTGGAGCGGA ACGAAGTGCG TTGCATCGGC AAGAATGGGC GGGTGCGCGT CCTGCCGATC
AACGGGTCGG CGGCAACGGC GCTGGAAGAA TACTTCGACA TCAGTCGCAA TCAACTGGCT
CGCGGCAGTG GGTCGTCAAC CGAAGCGCTG TTCCTCAACC ATCGCGGCAA ACGCCTGACG
CGCCAGGGGT TCTGGTTGAT ACTCAAGCAG TACGCCGAAG AATTGGGGTT GAGCGATCTG
ACGCCTCACG TGCTGCGGCA TTCGTTTGCC GTGCATATGC TCAATGCCGG TTTTGATCTG
CGCGCGGTGC AGGAGTTGCT GGGGCACACA TCGATTTCGA CCACTCAAAT CTATACCCAT
CTCAATCACG AGTCGTCGCA CACACCGCAT GCACATCCTG CCCCGCGCGC CAGCGAAGTC
AACGGTGTGC GGGACGAGCA GGCGCTCGTG CCAGAAGAAA AGTAA
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| Protein sequence | MNEQVEAFLR HLADERNLSA NTIAAYRTDL EQFCEFLHGR RLFAWHDVTH DDVLAFLIDL
RERRYASSTV ARRVAAVKSF FTFLTGRGIV QRDPTERIDS PKVDRDLPRA LTPRQVDELL
ELPLRSPTPE RIRDKAMLEL LYATGVRVSE LVALNVNDVD LERNEVRCIG KNGRVRVLPI
NGSAATALEE YFDISRNQLA RGSGSSTEAL FLNHRGKRLT RQGFWLILKQ YAEELGLSDL
TPHVLRHSFA VHMLNAGFDL RAVQELLGHT SISTTQIYTH LNHESSHTPH AHPAPRASEV
NGVRDEQALV PEEK
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