| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_0015 |
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| Symbol | |
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| ID | 5537472 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus castenholzii DSM 13941 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009767 |
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| Strand | + |
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| Start bp | 14871 |
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| End bp | 16382 |
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| Gene Length | 1512 bp |
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| Protein Length | 503 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640892180 |
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| Product | cell envelope-related transcriptional attenuator |
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| Protein accession | YP_001430172 |
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| Protein GI | 156740043 |
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| COG category | [K] Transcription |
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| COG ID | [COG1316] Transcriptional regulator |
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| TIGRFAM ID | [TIGR00350] cell envelope-related function transcriptional attenuator common domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0348648 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0000779954 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGACCGAT CAACACTCGA CTGTCGTGAA GCGCGGCGAT TGATCGATAT CGGCATTGCC
CCAGGCGCCG GGCGCCCTGA TCGTCGCGCC CTGGGATTCC ATCTTGCCGG CTGCGCAGCC
TGCCGCACCT ATCGCGCGCA CAGGGGCGAT GCGCTGCTCG CTGCGCTGCT GGAAACGCCG
CCCGATCCCG GTTCCTCCCC GGCAACGCAA CCTCCGCAAC AGTTACCGCG TGCGATACGG
ATGATCCGCT TGGCGAGCCT GACACTGACC GGAGTCGCTG CTATCCTGGG TCTGCTCTTC
GTCGGACGTC TGGCAATCGC CTTTGCCTCA ATTGCAGGCA GTATGAGCGC AATGGCAGGA
CGAGCCGACC AAACGCAGAT CGCTCCACCT GCGACAATCC CGTCGGAACT GGCGACTCTC
GTCCCGCCGA CGGTGCCGCC GCCTGCCTGG ATATACGCCC CCGCGACGAC ACCGGTGTTT
CCTTTGGAAA CTGCGACACC GATGCGTATG ATCGAACCCA CGGAACCGGC GCGTCCGACC
GTTGCGGAGG CGCCGGTCGT CCCGGTTGCG TCATCGCCGA CGATCGTCGC GCCATCGTCG
ATTTTGCCGA CCATCACACC CATTCCGCTG CGCCCCGATT ATCGTCCCGG GGCGCCGACT
CCCCCGTTGG TTCCGCTCCC CACGCTGTCG AACATTCCTC AGCGCGCGCC GCCGCCAGGG
ACAGCGATCA ATGTGCTGCT GCTGGGCATC GACCGGCGAC CGGGCGAAAC GTTCCCGGCG
CGCGCCGACG CCATTATCGT AGCGCGCATC GAACCGGAGC GCCGCCGTGT TGCCTTGCTC
TCACTGCCGC GCGACCTGGT GGCGCCGATT CCGGGATGGG GGTGGTCGCG GATCAATGCT
GCGTCCGTCT ACGGCGAACT CAACCCGACG CTCGGTGGAG GCGTCGCGCT CACGCGGCGC
ACGATCAGCG AGTTTCTTTC TATCCCTATC GATTACACCG TTACCGTCGA TTTTACCGGC
TTTATCGGCG CGATCGACGC GATTGGCGGC GTGACGATTG ATGTGCCGGT CGAACTCTAT
GATCCACTCT ATCCGACAAT GGACTACAGA TACACGGTTG CGCACTTTCG CCCTGGCATC
CAGCATATGG ACGGCGCGCG CGCGTTGATG TACGCCCGTA TCCGACATAT GGACAGCGAT
TGGGAACGGA TGAAGCGTCA GCAGGCGGTC ATCATTGCGG CGCTCGCACA GGTGCGTGAA
CAGAACGTCG TCGGGCGCCT CGAAAGCATT GCAGCGTCGA TGACCGCGTT ACGCGGCTAC
GTGACCACTG ATATTCCTGA AACGCAACTG CTCGGTCTGG CGTGGGCATT CCGCGACTTC
ACACCCGATC AGATCGAACG CTACACATTC GATGCCAACT ACGTCAGCAC CGGCGCACCG
GACGATCCCT ACGCACAGTA TGCGCTGCCA GGAGCGGTTG ACGATCTGCG CGCGCGTTTG
CTGGGGCAGT GA
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| Protein sequence | MDRSTLDCRE ARRLIDIGIA PGAGRPDRRA LGFHLAGCAA CRTYRAHRGD ALLAALLETP
PDPGSSPATQ PPQQLPRAIR MIRLASLTLT GVAAILGLLF VGRLAIAFAS IAGSMSAMAG
RADQTQIAPP ATIPSELATL VPPTVPPPAW IYAPATTPVF PLETATPMRM IEPTEPARPT
VAEAPVVPVA SSPTIVAPSS ILPTITPIPL RPDYRPGAPT PPLVPLPTLS NIPQRAPPPG
TAINVLLLGI DRRPGETFPA RADAIIVARI EPERRRVALL SLPRDLVAPI PGWGWSRINA
ASVYGELNPT LGGGVALTRR TISEFLSIPI DYTVTVDFTG FIGAIDAIGG VTIDVPVELY
DPLYPTMDYR YTVAHFRPGI QHMDGARALM YARIRHMDSD WERMKRQQAV IIAALAQVRE
QNVVGRLESI AASMTALRGY VTTDIPETQL LGLAWAFRDF TPDQIERYTF DANYVSTGAP
DDPYAQYALP GAVDDLRARL LGQ
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