| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_2627 |
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| Symbol | |
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| ID | 5453555 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 2832918 |
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| End bp | 2833724 |
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| Gene Length | 807 bp |
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| Protein Length | 268 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640878204 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001413892 |
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| Protein GI | 154253068 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 0.335809 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 46 |
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| Fosmid unclonability p-value | 0.150749 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTCGTA TGCAGGGCAA GGTAGCGATC GTCACGGGCG CGGCAAAGGG GATCGGGGCG
GCGACCGCCA AGGCGCTGGC ACGCGAGGGG GCGAAGGTCG TGTGCAGCGA TTTCGACGCG
GAGAACGGCC AGGTTGTCGC CGACGAAATC GCGGGCGAGG GTGGGACGGC AACCTTCTTC
CGGCATGACG TGACCGACGA GGCGCAATGG GAAGCCGTGG TGAAGCTGGC GGAGGAGAAA
TTCGGCGGGC TTCATGTGGT TGTGAACAAT GCAGGCATCG CGCCGGAGGC CGGCCCCATC
GAGGAGAAGA CGCTGGCCGA CTGGCGGCAC ACGATCGAGG TCGATCTCGA CAGCGTGTTT
CTTGGCTGCA AACACGGCAT CCGCACGATC AAGAAATATA CGTCGAAGGG CGGCGCGGGC
GGTGCAATCG TCAACATTTC CTCGATCCTC GGACTTGTCG GGCAGTCCGG CGCCAGCGAC
TACAATGCGG CGAAGGGGGG CGTCAGGCTT CTTACCAAAT CGGCTGCGCT GGAATGCGCC
GATGCGGGCT ACAATATTCG CGTGAACTCC GTGCATCCCG GCTACATAGA TACGCCGATG
GTGAAGAACG TCATCAATCG CGGCGTGATG GGCGGTGCGA CCGTAGGCGC GAACGAGATG
CGCGAAATGC TGATCATGCA GCATCCGATC GGAAGGCTCG GTATTGCGGA GGAAATTGCA
AACGCGATCC TGTTCCTGTC GAGCGACGAA TCCACCTTCA TGACCGGATC GGAAGTCGTG
GTGGATGGGG GATATACGAC CCGCTAG
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| Protein sequence | MARMQGKVAI VTGAAKGIGA ATAKALAREG AKVVCSDFDA ENGQVVADEI AGEGGTATFF
RHDVTDEAQW EAVVKLAEEK FGGLHVVVNN AGIAPEAGPI EEKTLADWRH TIEVDLDSVF
LGCKHGIRTI KKYTSKGGAG GAIVNISSIL GLVGQSGASD YNAAKGGVRL LTKSAALECA
DAGYNIRVNS VHPGYIDTPM VKNVINRGVM GGATVGANEM REMLIMQHPI GRLGIAEEIA
NAILFLSSDE STFMTGSEVV VDGGYTTR
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