Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_1316 |
Symbol | |
ID | 5456215 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | + |
Start bp | 1451028 |
End bp | 1452506 |
Gene Length | 1479 bp |
Protein Length | 492 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640876887 |
Product | major facilitator transporter |
Protein accession | YP_001412593 |
Protein GI | 154251769 |
COG category | [R] General function prediction only |
COG ID | [COG2270] Permeases of the major facilitator superfamily |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.387007 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 0.0000142592 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGGTGGGTG CCGTCGACAA GACTGCCGGT GACGAGCCGG TTCGCGTGCA GGTGCCGGGT CAGGCGAGCG CGCAACTTCT CTCCGCCACC GGCGATCATG CGGCAAACGG GCTCGGCCAG TGGAGCTGGG CAATCTTCGA ATGGGCCCGC AATCCATACG TCATCCTCAT CACCATCTAT ATTTTCGCCC CCTATTTCTC GAGCACCGTC GTCGGCGATC CGGTTCGCGG CCAGGCCATC TGGGGCAACA TCAACGGCAT CGCCGGTTTC TTCATCGCCT GTCTCGGGCC GGTGCTCGGC GCCATCGCGG ATACGGGCGG CAAGCGCAAG CCCTGGATCG CCTTCTTCAT CGCGGTCATG GTGCCGGCGA TCTTCATGCT CTGGTGGGCG CTGCCCGGCG GCGAGGGACT TTCCATCCTC ACCATCGCCG CGCTCATCGT GCTGATTGCG GTCGCCTTCG AATTCTCCGC CGTCTTCCAC AATTCGATGC TGCCCGCCGT CGCACCGCAT GAGCGGATCG GCTTTCTCTC AGGCCTCGGC CTTGCGCTCG GCAATGCGGG CGCGCTGCTC ATTCTCTGTT TCATGCTCTG GGCCTTCATG CTGCCGGGCA TGGTGCCGTG GGGCTTCATC CCCGACAGCC CACTTTTCGG CATCGACACG GCGGCGCATG AAAACAGCCG CGTCGCCGGC CCCATCGTCG CCGTCTGGAT GCTTCTCTTC TCGCTGCCGC TTCTTCTCTG GACGCCGGAT GTGAAGGGCG AGGGCGTGCC GGTCGGCACC GCCATCCGCC GCGGCATCGG CTCCGTCGTC GGCACGGTGA AGAAGCTCCG CCACTACCGC AACATCGCGA TCTATCTCGG CGCGCGCATG TTCTACAATG ACGGCAAGAC GGCGGTGCTC GTCTTCGGCG GCGTCTATGC GGCGGGCGTC TTCGGCTGGG ATGTGCTGAC GCTCACGATC TACGGCATCG TGCTGTCGGT CTTCGCGGTC GCGGGCGGCT TTTTCGGCGG CTGGCTCGAT GACAGGTTCG GTTCAAAGCG CGCCATCCTC GTCTCGATCG GCGGCACCTG TATCGGGCTC GTGTTCGCGA TCTCGATGAC GCCGACGGAA ATGTTCTTCT TCCTCCCCTA CGATCCCGCC ACCGCGCCGC CGATCTGGGA TCTGCCGTTC TTCCGCACAC TGCCTGAACT CATGTATCTG ATCGTCGTCC TCATCATCGC GATCTGCATC ACGGCGGCCT ATGCGAACAG CCGCACCATG CTCGCGCGCA TCGCGCCCGT CTCCAAGATG TCGGAATTCT TCGGCATCTA TGCGCTTTCC GGCACGGCGA CGGCCTTTCT CGGTCCGCTG CTCGTCGGTG TGGCGACGCA TTATTTCCAG AGCCAGCGTC TCGGCTTCGC CTCCATTCTC GTGCTGCTCG GCATCGGATT TGCCGGTATG ATGTTCGTGA AGGAAGAACG CGCGGAGGCA ATCGATTGA
|
Protein sequence | MVGAVDKTAG DEPVRVQVPG QASAQLLSAT GDHAANGLGQ WSWAIFEWAR NPYVILITIY IFAPYFSSTV VGDPVRGQAI WGNINGIAGF FIACLGPVLG AIADTGGKRK PWIAFFIAVM VPAIFMLWWA LPGGEGLSIL TIAALIVLIA VAFEFSAVFH NSMLPAVAPH ERIGFLSGLG LALGNAGALL ILCFMLWAFM LPGMVPWGFI PDSPLFGIDT AAHENSRVAG PIVAVWMLLF SLPLLLWTPD VKGEGVPVGT AIRRGIGSVV GTVKKLRHYR NIAIYLGARM FYNDGKTAVL VFGGVYAAGV FGWDVLTLTI YGIVLSVFAV AGGFFGGWLD DRFGSKRAIL VSIGGTCIGL VFAISMTPTE MFFFLPYDPA TAPPIWDLPF FRTLPELMYL IVVLIIAICI TAAYANSRTM LARIAPVSKM SEFFGIYALS GTATAFLGPL LVGVATHYFQ SQRLGFASIL VLLGIGFAGM MFVKEERAEA ID
|
| |