Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_1083 |
Symbol | |
ID | 5455092 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | - |
Start bp | 1186826 |
End bp | 1189282 |
Gene Length | 2457 bp |
Protein Length | 818 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640876653 |
Product | patatin |
Protein accession | YP_001412362 |
Protein GI | 154251538 |
COG category | |
COG ID | |
TIGRFAM ID | [TIGR03607] patatin-related protein |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 63 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGGAAA AGGAACTCAG GCTCGCTCTG GTGTGCTACG GCGGCGTCTC TCTTGCCGTC TATATGCACG GGGTGACGAA GGAAATTCTG AAGCTCGTCC GGGCGTCACG TGTCTATCAC CACGACCTCG CCCGCTCGCA CCAGGCTTCC GCCACCTATC TCGACGTGGA TCACGACGAC CGGGAGACGG ATACCGAAGA ACTCTATTTC GAGTTAATCC AGGCGATCGG CCAGTCACTC GAGCTGCGCG TCTTCGTCGA CACGATCGCG GGCGCTTCGG CCGGTGGGAT CAACGGCGTA TTGCTGGCGC GCGCGCTGGC GCACGACCTG CCGATGGATT CGCACCGAAA AATGTGGCTG GAGCAGGCGG ATATCGTGGC GCTGATGGAC GAGAAGCACC TCGCCGGAAA GTGGGACAAG CTTTTCATGA AGCCCATTTT CTGGGGGCTG ACCGACAAAT GGCTTTCGCG CTATGCGCCC GACATCGAGA TGCGTCAAAA GCTGCAACTC TTTACGCGCT CGCGATGGTT TCAACCGCCC TTTTCCGGCG CGATCATGAG CGGAATGCTG CTCGATGCCT GCCTCTCCAT GGGCGAGGCA GCACCGGCAA ATGCGTCACT GCTGCCGACA GGACATCGGC TCGACCTCAT CGTCTCAGTG ACCGATTTTC ACGGCTACAG CCAACATATC CCCCTGCATG ATCCCGTTTC AATCCGGGAG CGGGAGCACA GGCATATCCT GAAATTTTCC TACTTCCAGC ACCCGAGCGG CGCCATCGAC AGCGATTTCG ATCGCGAGCA TGTACCAGGC CTCGTTTTTG CCGCGCGGGC GACATCGTCA TTTCCCGGTG CTTTTCCACC GGCGCGAATA GGAGAGATCG AGAAGGTTCT CAATGACCGC GAACTGGAGT GGTCCACGCG CGAGGAATTT CTGCACGAGA ACTTCAAGCC GTTGATCGCG GCAGGCTCCG ACCCCGTGAA AGCCTCTTTC ATCGATGGCA GCGTTCTCAA CAACAAACCT TTCGCCGAGG CCATCACGGC CATTCGCGGG CGGCCCGCTT ACCGGGAAGT GGACAGGCGC GTGGTCTATA TCGACCCTGA TCCGAAGGGC GGTCGCCTGG AAGCTGGCGG TGCAGCACCC GGATTTTTCC ATACGATACG CGGTGCGCTC TCCGATATTC CCCGAAACCA GCCGGTGCGC GATGAGCTGG AAGCTCTGCA CGATTTTTCA GAGCGCGTGA GGCGCTACCG GCAAATCGTA TCCGCAACGC GGCCTCATGT TCGCCAGCGG ATCGCACGCC TTTTCGACGG AAAGGCGCTG ACAGACCCGA CGCCCGAGCT TCTGGCCTCG CTCAGGAACA GTGCCAACGC GCAGGCGGCG CTCGAGGCGG GATATGCGTA TGACGCATAC ATTCAGCTCA AGGTTTCCTC GGTGCTAGAC CAGATCACCG GGATCATCGC CGATCTGAGC GAGGCGGTGC ATCACCCCAG CGACCGGCTT GCCCTTTCGC GCGCAGTGGA AGCGTGGGCG AAAGAGCGCG AGATTTTTCC TGTGCACTGG TTTACCCACG CGACGCAGGG CATGGAGCCC AGCAAGGAAG ACTCCTGGGT GCGCTTCCTG CGCGAGTTCG ATGTCGGCTT CCGCGTGAGG CGGCTGCGCT TCGTGGTTCG GCGTCTCAAC GAACTCTATG AAGGGATCGG GGCAGGCGAG AACATTTATT ACAATCCCGA TGCCCTCGAC GATTTCAAGG CACAGCTTTA CAGAAGCCTC GAACGGCTGC AGTCAGAAAC CAGGACGCGG CTGCGCTCGA CTGAAACAAC GCTTCTGTGC AAGGCGATCT ATGATGACGG CGTGGCCGAA CCCCACGAAA TCGATGGCTT CACGGCGCAT GTCGCACCGA GGCTGAACCT TGTCGGCCTC GACCGCGAAG TGGATGAGGC CTTTACGCAG CTCGCCCAGA TGCCGCTTCC GGCGGAAGTT CGCGTCGAAC TGCTGCAAGC ATATGTCGGG TTTCCATTTT TCGATGTGCT GACGCTGCCG CTCAACAAAT GGCAGGATCT CGACGATGTG GACACGGTGC AGGTGGACCG CATCAGCCCG GAAGACGCCA AGGCGATCCG CGAGGGCGGC GCACCGGCGA CACTGATGGG CCGCGACCTC GGCTACTTCG CCGCCTTTTT CAGCCGCCGC GCCAGAGAGA ATGATTATCT ATGGGGGCGG CTTCACGCTG CAGACAGGCT GGTCGACATC GTGGCGAGCA GCGCACCCGG GGCCGTGGCG AAATCGGGCA TCGACCTGGC GCAATTGAAG GCGAAGCTTT TCCGTTCAAT CATAAAGGCG GAACGGCCGC ACCTCGCCAA TGTGCCCGAG CTCATGGCCG ATCTCGAAAG GGAGATCAAA ATCCGGTTTG GCGACGAGAA GGCCGACGAA GAAGCGGCGA TCTTCCAGAA CGCATAA
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Protein sequence | MKEKELRLAL VCYGGVSLAV YMHGVTKEIL KLVRASRVYH HDLARSHQAS ATYLDVDHDD RETDTEELYF ELIQAIGQSL ELRVFVDTIA GASAGGINGV LLARALAHDL PMDSHRKMWL EQADIVALMD EKHLAGKWDK LFMKPIFWGL TDKWLSRYAP DIEMRQKLQL FTRSRWFQPP FSGAIMSGML LDACLSMGEA APANASLLPT GHRLDLIVSV TDFHGYSQHI PLHDPVSIRE REHRHILKFS YFQHPSGAID SDFDREHVPG LVFAARATSS FPGAFPPARI GEIEKVLNDR ELEWSTREEF LHENFKPLIA AGSDPVKASF IDGSVLNNKP FAEAITAIRG RPAYREVDRR VVYIDPDPKG GRLEAGGAAP GFFHTIRGAL SDIPRNQPVR DELEALHDFS ERVRRYRQIV SATRPHVRQR IARLFDGKAL TDPTPELLAS LRNSANAQAA LEAGYAYDAY IQLKVSSVLD QITGIIADLS EAVHHPSDRL ALSRAVEAWA KEREIFPVHW FTHATQGMEP SKEDSWVRFL REFDVGFRVR RLRFVVRRLN ELYEGIGAGE NIYYNPDALD DFKAQLYRSL ERLQSETRTR LRSTETTLLC KAIYDDGVAE PHEIDGFTAH VAPRLNLVGL DREVDEAFTQ LAQMPLPAEV RVELLQAYVG FPFFDVLTLP LNKWQDLDDV DTVQVDRISP EDAKAIREGG APATLMGRDL GYFAAFFSRR ARENDYLWGR LHAADRLVDI VASSAPGAVA KSGIDLAQLK AKLFRSIIKA ERPHLANVPE LMADLEREIK IRFGDEKADE EAAIFQNA
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