| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_0237 |
|---|
| Symbol | |
|---|
| ID | 5456393 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 256340 |
|---|
| End bp | 257326 |
|---|
| Gene Length | 987 bp |
|---|
| Protein Length | 328 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 640875800 |
|---|
| Product | type II secretion system protein |
|---|
| Protein accession | YP_001411517 |
|---|
| Protein GI | 154250693 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4965] Flp pilus assembly protein TadB |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 0.383042 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 68 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACCAGT CCACACTAAT GATCGCTGGA ATTGCCGTTC TTGCCGCCCT CTGCATAGGC
GCCATCGGAT TTCTGTTTGT AGGCGGTGAA TCCCGCTCAC AGAAAAGGGT GGCCCGCGTC
ACGCGCGCAG GAAATGCACG CCTAGTTGCT GTCGATGGTG AAGTCGACAA TAGCGAAAAG
CGCCGCAAGC AAATGCAGGA AACGCTCAAG GGGCTTGAGG AAAAGCAGCA GGAGCACAAG
AAGCGCGTTT CATTGAACAC CCGCATCGAG CGAGCGGGAC TCGAGATGAC AACACGAAAT
TTCTATATTG CGAGCATCGT CACCGGCATC GCCTTTTTTC TTGTCTTCAA GCTTGTAGGG
CTGTCGCTCC TGGTTTCGGC CTTGAGCGGT TTCGCCGGCG GCTTCGGCTT CCCGCGATGG
GTATTGTCGT ACCTTATCAA GCGCCGTCAG AAGGCGTTTA CCGAAGAATT CGCGAATGCT
ATCGACGTCA TCGTGCGCGG CGTCAAATCC GGCTTACCGG TCAATGATTG TCTGAAGCTC
ATCGCCACGG AATCACCAGA GCCCGTACGG ACCGAGTTTC AGGGAATTGT AGAAGGCCAG
CGTGTTGGCG TCACCCTGGA GCAGGGTCTC GCCAAGATCT ACGAGCGAAT GCCATTGCCG
GAAGTGAATT TCTTTCAGAT CGTGCTCGCC ATTCAGCAGA AGACTGGCGG CAATCTGTCC
GAAGCGTTGG GAAATCTCTC AAAAGTTCTT CGTGAGCGCA AAAAAATGCG TGGGAAAATC
CAGGCGATGT CTCAGGAAGC TAAGGCATCG GCAGGCATTA TCGGGTCGCT TCCGCCCGGC
GTCATGCTGC TTATCTACTT CAGCTCGCCG GGCTACATGG ACGTACTTTT TTCGACCACG
GCCGGCAACA TGATCATCGT CGGCGGCATC ATGTGGATGG CTATCGGCGT TCTCGTCATG
AAGAAGATGA TCGACTTCAA GTTTTAG
|
|---|
| Protein sequence | MDQSTLMIAG IAVLAALCIG AIGFLFVGGE SRSQKRVARV TRAGNARLVA VDGEVDNSEK
RRKQMQETLK GLEEKQQEHK KRVSLNTRIE RAGLEMTTRN FYIASIVTGI AFFLVFKLVG
LSLLVSALSG FAGGFGFPRW VLSYLIKRRQ KAFTEEFANA IDVIVRGVKS GLPVNDCLKL
IATESPEPVR TEFQGIVEGQ RVGVTLEQGL AKIYERMPLP EVNFFQIVLA IQQKTGGNLS
EALGNLSKVL RERKKMRGKI QAMSQEAKAS AGIIGSLPPG VMLLIYFSSP GYMDVLFSTT
AGNMIIVGGI MWMAIGVLVM KKMIDFKF
|
|---|
| |