| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_0233 |
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| Symbol | |
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| ID | 5456118 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 251352 |
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| End bp | 252827 |
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| Gene Length | 1476 bp |
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| Protein Length | 491 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640875796 |
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| Product | type II and III secretion system protein |
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| Protein accession | YP_001411513 |
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| Protein GI | 154250689 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4964] Flp pilus assembly protein, secretin CpaC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 65 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTGGAACA AGCTGACTGC GGTCTGCGCC GCGCCGAGGC TGCGCTCGAT GCGCATCGCT
GCGGCACTCC TGTGTGCGGC GGCGATGGCT GTGAGCCCGG CGGGCGGCGC GTTCGCCGGC
GATGCGCGTC TGGTCAAGAT AGATCAAGGC GGTATTGGTC AGAGCTCGCG CAGCATTGTC
CTTGGGCTCA ACAAGGCGGC GATTGTGGAA CTGCCGATCG CTGCGCGCGA CGTCCTGGTC
TCCAATCCTG CGATTGTCGA TGCCGTGGTC CGCACGAACA AGCGCACTTA TCTCATCGGC
TTGGCGGTCG GACAAACGAA CGCCTTCTTC TTCAATGAAG CCGGACAGCA AATCCTCAAT
CTGGAAATTC GTGTCGCACG CGACCTGACG GGCTTGCGCG AGTCGCTCCG GCAATACTTT
CCGAAAGCTC GTATCGACGT AGAATCGATA AACGACCACG TGGTGCTTTC CGGAATGGTG
GCAAGCGCCA CCGACGCCAG CAAGGCACAG GATTTTGCCG CCCGCTATAT CGGTGGCGAC
AAGGAACATG TCCTCAACAT GCTCGGCATT GAGGGCAAGG AACAGGTGAT GCTCAAGGTG
ACGGTTGCGG AAATGCAGCG CAACGTCATA AAGCAGCTGG GCGTCGACCT CTCGACAGCC
GCGAATTTTG GCGACTTCGC TCTTCGTCTC GCAACGTCCA ATTCCTTCAG CGTCCAGGGT
GGATCGCTGG GTGGCTTGAC GACTGCGGCG GATGCCGCGG ATCCGACGCG CTATCAGAGC
GGCGACGTTA CCGTGGATTC GGCTATCCGC GCCCTGGAGC GCGATGGCAT CTTGCGGACA
CTCGCCGAGC CAAACCTCAC TGCGATCTCC GGCGAGTCGG CGAAGTTCCT CGCCGGTGGC
GAGTTTCCGG TACCGACATC GCGCGACCGC GACGGCAACG TACAGCTCGA ATTCAAACCT
TTCGGTGTCG GCCTCAATTT CACGCCGGTT GTGCTGAGCG AGGGCCGCAT CAGCCTGAAG
ATTTCGACGG AAGTGAGCGA ACTGACATCC GAAGGCGCGT TCGTATTCCA GAGCACAAGT
GCGGACGGCG TCACTGTACC GGGGCTGAAG GTCCGCAGAG CGGAAACGAC GCTGGAGCTT
CCCAGCGGTG GATCGCTCGT CATGGCGGGC CTGCTCTCGG ACACGATGCG GCAGAACATC
GATGGGGTGC CCGGCGTGAA AGACGTACCG GTACTCGGCC AGCTTTTCCG AAGCCGCGAC
TACCAGAAAA ACGAAACCGA ACTCGTCGTA ATCGTCACGC CCTACCTGGT CGACCCCACG
TCGCGCAAGA ACCTCGTTCT GCCGACCGAC GGGTTTGCGC CGGCGAGTGA CATGGACACG
ATTCTCATGG GTCGTCTGAA TGCCACATAC GGTGCGCGAG GCGCCGCACC CGGGGACCAT
TCGCTGCAGG GGCCAGTTGG CTTCATTGTG GGTTGA
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| Protein sequence | MWNKLTAVCA APRLRSMRIA AALLCAAAMA VSPAGGAFAG DARLVKIDQG GIGQSSRSIV
LGLNKAAIVE LPIAARDVLV SNPAIVDAVV RTNKRTYLIG LAVGQTNAFF FNEAGQQILN
LEIRVARDLT GLRESLRQYF PKARIDVESI NDHVVLSGMV ASATDASKAQ DFAARYIGGD
KEHVLNMLGI EGKEQVMLKV TVAEMQRNVI KQLGVDLSTA ANFGDFALRL ATSNSFSVQG
GSLGGLTTAA DAADPTRYQS GDVTVDSAIR ALERDGILRT LAEPNLTAIS GESAKFLAGG
EFPVPTSRDR DGNVQLEFKP FGVGLNFTPV VLSEGRISLK ISTEVSELTS EGAFVFQSTS
ADGVTVPGLK VRRAETTLEL PSGGSLVMAG LLSDTMRQNI DGVPGVKDVP VLGQLFRSRD
YQKNETELVV IVTPYLVDPT SRKNLVLPTD GFAPASDMDT ILMGRLNATY GARGAAPGDH
SLQGPVGFIV G
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