Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Fnod_1683 |
Symbol | |
ID | 5451957 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Fervidobacterium nodosum Rt17-B1 |
Kingdom | Bacteria |
Replicon accession | NC_009718 |
Strand | - |
Start bp | 1832523 |
End bp | 1835033 |
Gene Length | 2511 bp |
Protein Length | 836 aa |
Translation table | 11 |
GC content | 37% |
IMG OID | 640875452 |
Product | alpha amylase catalytic region |
Protein accession | YP_001411175 |
Protein GI | 154250350 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0366] Glycosidases |
TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.332102 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCGGCTTA AAAGTTCACA TTTGCGATTT TTAGTGATTA TTCTTTTAAC TTTAGTAATT CTTTCATTTG CGGATGTAGC AACATACATG AAAGGTGGGT GGGCAGACAA GGTTCTCTAT ATGATTATGA TAGACCGATT TAACGACGGT GACCCATCGA ACAATAACCA AGCAAACGTT GAATATAACC CAAAAGATGG CGCAAAGTAC AGTGGTGGTG ATTTGAAAGG TATAATCGAT AAAATCGATT ACATTAAAGG TTTAGGTGTC GATGGTATTT GGATTACACC TCCTATCGCT AACCAATGGT GGGATCCATG GGTAAATTAC GGTGGTTACC ATGGTTACTG GGCAAGGGAC TTTAAGAAAG TTGATGAACA CTTTGGCACA CTAGATGATT ATAAAAAACT AGCTGAAGTA CTCCATAAGA GCAATATGTA CCTCATTCAA GATATCGTAG TAAATCACGT CGGAAATTAT TTTAGATTTA AAAACGGAAA TTTCGAATTA AATACTGGGA GTATACCAAC TTCAGCTCCA ACACAATATC CTTTTAATCT AAACAATTAC AACGACCCAG AACAACAGAA ACGTGCAATT TATCATTGGA CACCTGATAT AAATAACTAC AGTGACCCTG TTCAAAAATT GAACTATCAA ATGAGTGGCC TTGATGACTT AAATACGGAA AATCCGGAAG TTATACAAGC TCTTAAAGAT TCTTACAAAT ACTGGGTTCA AGAAGTTGGT GTCGATGGAT TCAGAGTTGA TACAGCCATG TACGTACCAA AATCCTTCTT TGACGAATTT TTCAACGCTC CAGATGGAAT ATTCAGCTTA AAAAAGAATT TTATAGCTTT TGGGGAAACC TGGCTCTCTT CTAAACCATA TGAGTCGGAA TCTGATAAAG AAATCGCTTC ATTCTTTGAC CACGGATTTA ACTCTATGCT TGATTTTACA CTTATGGAAG AATTAAGAAG GGTTATAAAA GGAGGACAAC CCACGGATTT CCTTGCATAC AGACTCGAAC TAAGAAACGA GATATTGAAA AAAGGATTGC TTGTTACATT TATAGATAAC CATGATATGG AAAGGTTTGG AAAGGGTGTT ACCCCGAATA TCACTCAACA AGCTTTGGGG TTAATATTAA CATTACCAGG ATTACCCGTG ATATATTACG GAACAGAACA GTACTTTGAG GAAACACGCG CGTCGATGTT CAAAAATGGC TGGGGTTCTT TCGGAGAAGA TCATTTCAAT CAAAATAGCG ATATGTATAA ATTTATACAA GAAGCAATCA AATTCAGAAA AAATCATCCG GCAACACGTT ATGGCGAGGT AAAGGTTCTT CTATCTGAAA AACGCTCATC TGGATTGTTA GTTTACACAT TAAAATGTTC TGAAGAAGAA TTATTCGTTG TACTTAACAC ATCTAACGAG CCAAGGATAA CTAATTTTAA ATCACCATAT GAATCAGGCA CCACACTTGA ACCAATTTAC AACATAGTGG GTGGAACAAG CACTCCTATA GTTGTTAAAG AAGGTGGATA CATAACTCTA AGAATACCCG GAAGAAGTTT GACTTTATTC TCAATATCAC CTGAAAAAAG CGATGTGTAC ACACCTAACG TTAAAGTCGA ACTTGAAATG AAATCTGGCG AATCAATCTC GCAACTTAGA GAAATAAAAG GTGAAACAAA CGCAAGAACT GTCTACTTAT ACATTGATAG AAAAGTTGAG AGCGAGCAGA AAATTGAGCC AAAAGACGGA AAGTTCTCAT TCACAATTGA CCCTATGAAA TTCGACCCTG GCGAGCACAT ATTACTTGTC AGAGCGGTTG GAAAAACATT AAAAGATACT GTGTACACGG AAGAAATAAA AATAAATATA ACCTTAGAAA AGAAAGTCCT TGCGGAAGTA AAAGACCCTA TGGACGATGA TTCAGGTCTA AATTATTCTT ACGTTTACCC AACAGATGCA ACATTTAAAA GGCAAATGGA CATACTTGAG ACAAAAGCTG AGAGTATAGG CAGTACTTTG GTTATCTCAA TAAAACCAAG AGATCTCACA AAGAGCTGGG GACCTCCTTA CGGTTTTGAC CATGTAACTT ATCAGATATT CATAGACGAC CCAAATAAGA AAGGCGTAAG TTATCTCCCG TTGCAGAATT ACGAATTTTC TGATTGGGAT TGGGATTACG AAATCTTCGC AACAGGTTGG CTTAGTGCCA TTTATACTGC AAAAGGCTCT TCGAAAGATA AATTTGGAAC ACAAATCGGT TCACCAGAAG TGTTCGTTGA AGATGGCTGG GTAAAGATAA TTGTAAAAGG CGATTGGATC GGTAATCCAT CTGATTTCAC CAATTGGACA ATATACATAA CAAGTTGGGA CTACGATGGA ATTGAAAGTA AATTCAGACC ATTACAACAA GAACCAAAGG CGTACATTAT GGGTGGTGGA AATCCAAACG ATCCACTGAT TATGGACGAT TGCTGGTTAG AAATTAAATA A
|
Protein sequence | MRLKSSHLRF LVIILLTLVI LSFADVATYM KGGWADKVLY MIMIDRFNDG DPSNNNQANV EYNPKDGAKY SGGDLKGIID KIDYIKGLGV DGIWITPPIA NQWWDPWVNY GGYHGYWARD FKKVDEHFGT LDDYKKLAEV LHKSNMYLIQ DIVVNHVGNY FRFKNGNFEL NTGSIPTSAP TQYPFNLNNY NDPEQQKRAI YHWTPDINNY SDPVQKLNYQ MSGLDDLNTE NPEVIQALKD SYKYWVQEVG VDGFRVDTAM YVPKSFFDEF FNAPDGIFSL KKNFIAFGET WLSSKPYESE SDKEIASFFD HGFNSMLDFT LMEELRRVIK GGQPTDFLAY RLELRNEILK KGLLVTFIDN HDMERFGKGV TPNITQQALG LILTLPGLPV IYYGTEQYFE ETRASMFKNG WGSFGEDHFN QNSDMYKFIQ EAIKFRKNHP ATRYGEVKVL LSEKRSSGLL VYTLKCSEEE LFVVLNTSNE PRITNFKSPY ESGTTLEPIY NIVGGTSTPI VVKEGGYITL RIPGRSLTLF SISPEKSDVY TPNVKVELEM KSGESISQLR EIKGETNART VYLYIDRKVE SEQKIEPKDG KFSFTIDPMK FDPGEHILLV RAVGKTLKDT VYTEEIKINI TLEKKVLAEV KDPMDDDSGL NYSYVYPTDA TFKRQMDILE TKAESIGSTL VISIKPRDLT KSWGPPYGFD HVTYQIFIDD PNKKGVSYLP LQNYEFSDWD WDYEIFATGW LSAIYTAKGS SKDKFGTQIG SPEVFVEDGW VKIIVKGDWI GNPSDFTNWT IYITSWDYDG IESKFRPLQQ EPKAYIMGGG NPNDPLIMDD CWLEIK
|
| |