| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Fnod_0025 |
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| Symbol | |
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| ID | 5452616 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Fervidobacterium nodosum Rt17-B1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009718 |
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| Strand | + |
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| Start bp | 27434 |
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| End bp | 29395 |
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| Gene Length | 1962 bp |
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| Protein Length | 653 aa |
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| Translation table | 11 |
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| GC content | 31% |
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| IMG OID | 640873775 |
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| Product | lipopolysaccharide biosynthesis protein |
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| Protein accession | YP_001409555 |
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| Protein GI | 154248730 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3206] Uncharacterized protein involved in exopolysaccharide biosynthesis |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.210943 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATTTCG AGGAATTTGA AAAGAACAAC GAAGAGTTAA ATTTGAAGGA CATACTTATT
ATATTTAAAA GGAGATATAA ATTAGGTGTT TTTATATTCT TGATTACAAT TTTATTGAGC
GCTGTTTATA TATTTTTCAT AGCTAAACCA GAATACGAAG TCTCGGCACT TATAAAAGTT
TCAAGTGCTG GTAGTACTAC TCAATTAAGT GGAACCGCCG CCTTGATTCT TGGAACATCC
AACCCGCAGA TTGCTGATGA ACAATTTATA ATGAAAAGTC GACCTGTTCT TTTTAGTGTT
ATCAAAGAGC AAAATTTGGT AGATTATTTT AGAAAAAAAG TTAAAAATCC GAAAAAAGCA
CAGAAAATAA ATGAAGAGTA TATTATCACT AAAATACTCG AAAAGAAAAT ACAAGTAGAA
AATGAGAAAA ATACATCACT GTTAAGAGTG TCGTTTACTT ACACAGATAA AGAACTAGCT
TGCAAGGTGT TGAATTCACT TATTGATAAT TATTTGAAAT TTACAAGACA GTTGAATAAA
GATGAAAAAT CGTACACAAA AGAAATTTTA GAAAAGAAAA TTCCTCTATT GGAGGAGGAA
ATAAAGCAAA TAAGCGATAA GATTCAGAAA TTCAAGGAGG AAAAATCTAT AGCTCCCACA
GTTGAAGCCG AAGAAATGAG CAAAGGGTTA ATAATTTTGT ATAATGAATT GTTTGAAGCG
GAAGGGAAGG TATTATCTTA TGAAAAAACG ATAAAATTAG TTGAGAATCA AATAAAACAA
ACAAAGGGGG TAATTTCAGA GTCTTCTTAT ACACCAGAAA GTAAAGTTAT AACAGAACTC
CGTGCTAAAC TCATTGATTT AAATATTGAA CTTTCGAGTT TGTTACAAAC TTACAGTGAG
TCCGCACCCG AAGTTCAAAG AGTAAAAGAA ATGATTAGAA AGACAGAGGA AGCACTTGAG
AAGGAAATAA AAGATAAATT AACAAACAAA ATTGATAGCA GCGATCCCGT ACTTTCAGAA
CTTTATTCTA ACTTAGCGCA AGCACAACTG CAATACGAAA TAAGTAAAGT GCAATATGAA
GCTATCAAGA AAAAAATAGA TGTTATTGAA ACAAATTTAA AAAAATTTCC AGCATATGAA
CAAGAGTATA TAAAATTGCA GAGAGATTAC ACGATTAAAC AACAATTGTA TTCTCAACTA
GTACTTCAAT ACGAACAATA TAAACTCTCC GAAGCAGGCT TGACATCTAA AATTCCAATC
GTAGTTGAAG AACCAATTAT ACCGGAAAAA CCTTCTAAGC CAGATAAAAA ACTTGTCCTT
GCAGTAAGTG GTGTCCTTGG GATTTTCTTA GGTATACTCG GTATCTTTCT AAGAGAGGCA
AGTGACAAAG TGATAAGGGA CGAAGAAGAT ATTAAAAGAT TGTTGGCAAT ACAGCCTGTG
ATATTTACTA AGAATGAAAT TACAATACTT TCAAAGTCAA ATAATTCAAA TTCAAAATCA
TTAAAAGAGC TTGCTGTAAA ACTTTTTAAC GAAAAGGAGC CTAAAATTGT TGGTTTCACA
AATGTTTCGA ACGTGGAAGT ACAGTTGCCA CTTAAATTTG CTGATTATAT TTCAAATGCT
ATGTCAACAG TTTTGATAAC AAAAGATAAG AAAGAAAATA TATCATCATA TCAAGTGCAT
GAAAGCTTGA GTATAATTAG TGAGCCCGCT TTAAAAGGTG TTTTAGTGGG CAAAACAGAA
GAAGAATTTT CAAGAAATTT AAACAGTCTC AAGAAAGAAT ATGAATTTGT GGTTGTTGAA
TTACCCAATT ACGATGATCC GAATATCTAT ACTGCAGCAA AACACGTAGA TAAAATTGTT
GTTTTAACAA TCAAGGATAA CACTAAAAAA TATGAATTAA TGGATTTAAT TATGAAATTT
GGAAAAATGG AAAAAGATTT AGTAATTGTT TTGGTAAAGT AA
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| Protein sequence | MNFEEFEKNN EELNLKDILI IFKRRYKLGV FIFLITILLS AVYIFFIAKP EYEVSALIKV
SSAGSTTQLS GTAALILGTS NPQIADEQFI MKSRPVLFSV IKEQNLVDYF RKKVKNPKKA
QKINEEYIIT KILEKKIQVE NEKNTSLLRV SFTYTDKELA CKVLNSLIDN YLKFTRQLNK
DEKSYTKEIL EKKIPLLEEE IKQISDKIQK FKEEKSIAPT VEAEEMSKGL IILYNELFEA
EGKVLSYEKT IKLVENQIKQ TKGVISESSY TPESKVITEL RAKLIDLNIE LSSLLQTYSE
SAPEVQRVKE MIRKTEEALE KEIKDKLTNK IDSSDPVLSE LYSNLAQAQL QYEISKVQYE
AIKKKIDVIE TNLKKFPAYE QEYIKLQRDY TIKQQLYSQL VLQYEQYKLS EAGLTSKIPI
VVEEPIIPEK PSKPDKKLVL AVSGVLGIFL GILGIFLREA SDKVIRDEED IKRLLAIQPV
IFTKNEITIL SKSNNSNSKS LKELAVKLFN EKEPKIVGFT NVSNVEVQLP LKFADYISNA
MSTVLITKDK KENISSYQVH ESLSIISEPA LKGVLVGKTE EEFSRNLNSL KKEYEFVVVE
LPNYDDPNIY TAAKHVDKIV VLTIKDNTKK YELMDLIMKF GKMEKDLVIV LVK
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