| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Fnod_0024 |
|---|
| Symbol | |
|---|
| ID | 5453236 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Fervidobacterium nodosum Rt17-B1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009718 |
|---|
| Strand | + |
|---|
| Start bp | 24184 |
|---|
| End bp | 27396 |
|---|
| Gene Length | 3213 bp |
|---|
| Protein Length | 1070 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 34% |
|---|
| IMG OID | 640873774 |
|---|
| Product | polysaccharide export protein |
|---|
| Protein accession | YP_001409554 |
|---|
| Protein GI | 154248729 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1596] Periplasmic protein involved in polysaccharide export |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.00172785 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAA GTTTACTTGC TTGTCTTGTG ATACTTTTAG TTGTTAGTGT ATTTGCGTAC
AAAGTGCGTG TTGGTGATAC TATAGCCATT GAAGTTTTTA ACCAACCATC GTTGAGTAGA
ACGGTTGAGG TTGCCAATGA TGGTACAATC GCTTATCCAT TTGCTGGGAA TATTAAAGTA
GAGGGTAAAA CTGTTGATGA AATTAAAACC CTTATAGAAC CTTATGTCAA GAATATTTTA
AAAGATCCTA TAATTACGGT TTATGTAGTG AGATACGCAC CCATGAATAT TTACATTCAA
GGTGTTTTAA ACAGGGTTTT TGATATTTCC CTTATACCAA ATCTGACACT TTCAAAATTA
TTTTCATATC TTTCCATAGA TAAAAATTCA CCAATTGATT TTTCAAACAT AACAGTTACG
CGCGATGGAA AGTCTACAAA ATTTGATATG ATTCCGTATT TTTACGAAGG TAAGATTACG
AACGATATTG TGCTGAGGGA AAGCGATATT ATATACTTCC CCCCATTTAA GTATGATATG
CCTATTCAAG TCACGGGAGC TTATACTCTA TTAACACCTT ACGAGCCAGG GATGACTTTA
AAGTATCTTC TCATAAAGCT TGGAGTAATT GACAAAACAA TAGCTAAAAT AGAATCTTCA
GTTCTTACAG TCGATGGCAA GTCACAGACG GTTAATCTTG AGGATGTAAT TGCTGGAAAA
GTTGATTATA AGCTTTCCGC TGGTGCTTCG TTGTATATAC CTAAGAGGCA AGAGCGTTTT
GTGTATGTCG TTGGGTTTGT TCCTTCAAGT GGGATTAAAA CATTTTCTGT GGAAGAAGAT
ATGAACCTTG CGCTTGCGCT TGCAAAGGCT GGAGGAATAT CAAAAGAAAA CGAAAAATGG
GTGGAGAAGA TAAGGATAAC TTCCCCAAAC GGTAAAGTAG AAGATTACCA CCCAGCCATA
CTTTCCAATG CTTCTTTAGT TAAATTGGAA ATAGGAAGTA TAGTTGAGGT TATCAAATAT
CAAGAATTTA AAGTGTACCT TAAAGGAGAT ATTTCAACAG GAATTATTGT ATTTCAACCA
GATGAGTCAA AAACACTTGA AGTTTTACTT ACAAAAATTG GTGGAATTAA GACATCAGAA
TATAAATGGA TAGAATCAGT GAAAGTAAAT AATAAAGCGG TCGATATATC AAAAGCTAGT
GAGATTATAT TAAATAACAA CGATGTGGTC GAAATAAGGA GATATCCAGA GTTTAAGGTT
TACTTGACTG GAGATTTTAA AACAGGGATA ATTACATTTG AACCAGATGA ACCAAAAACG
CTGAGTGGAC TTCTTACAAA AATAGGAGGA ATACAAACTG ACCAAATTAA GTGGATTCAA
TCTATAAAGA TTAACGATAA AGAAGTCGAC TTTAATAATC TTGATAAATA CATACTTTCG
AATAATGATG TAGTTAATAT TAAAAAATAT CCAGAATTTT ATGTTTATGT TCAAGGTCTT
GCAAATATAA AAGGTAAAGT TTACTTTGAA CCACAAGAAG CGAAAACCTT AAAACTTCTT
ATTGCAAAAG TTGGTTTACC AAGCGAAGAT GTTGAAAACG AAGGGAAAGC TATAATAAAT
AATAATCAAG AATTGAATTT GAAAGACGTG ATTTACAACA ATAAAGATTA CGAACTTTCT
CTGGGTGATA TTATTCAAAT TGTTTACGAA CCATTTGTTG TGAATACAAT AGGTACAAAT
GCTGGGGTTA TTCAACTATC TTACAAAGAG CCTCGGACAC TTGCGTATTT GGTTAAAAAG
CTTGGAATTT CCCAACCTGA GAGTATAGAT AGTATCACGT TGATACGTAA TGGTAAAGAA
ATAAATTATT CTGTAAACGA AATAATATAT GAGAAAGTCA ACGTGCCACT TGAAAAATAC
GATACAGTTG TTGTAAAGCG TGCTGAAAAT AACGCAGTTT ATCTTACAGG AGATGTCTCA
GCTTACGTAA CATTTGACTA TAATGAGCCA ATAACAATAC AAAAAATACT TGCAAAAGTT
GGTTTGAACG ATTTGAGAAG AATTGACAAG ATAACTTTAG GAGACAAAGA AATAGATTTG
AGAGAAAATA AAATTATTGA TAAAGGTTCA ATATTAAACG TTTCTTTGAA AAGACCGTTG
TTTGTAACGG CGATGGGGTA TATCAAAACA ACGGGAAGAG TACAATTCGA TTATTATGAA
ACTCCCGATT TGAAAACGCT CTTTGCTAAA CTTGGCGGGC TTGTGATTGG ACCTGAACTT
TATTACACAT CCGATAAAGT TGTTGTAATG CGTGATGGGA AAGTATTAGC ACAATACGAT
GCTGAAAAAA TTTACAAAGG AATTGAAAAT GCAATGCTTG AGGATGGAGA TTTTGTCTAT
GTAACTACCA AAGAACCGAA TTATGTTTAT GTATTCGGTA AAGGAGTGCA AAACGGTCTT
GTTAAATTTA ATGCGAGCGA AGAGTTTGAT CTGAGAACAC TCATTAGTAA AATCGGAGGT
ATAAAGGAAG GTATAAGCAA TAAGATAAAT ATAATAGTAA ACGGTGAGAT AAAAACAATT
CAATGGACAG AGTTAACGAA TATTCAATTA GAAAATGGTG CAATACTGAC ATTCGATGTG
GATAGAGAAA ATTATATCTA TCTAATAACA GCTGACGGCA AACCAAATAT GATATACTCG
GATAAAGCCA TAACACTTTA TGAATTACTT ACAAAATTTG GTGTAAATAA GAATTATAGA
AAATTGGAAT TGCTAAGTGG TACAGAAAAA AGTACCATCG AACTTAAAGA TATATCTCAG
GCAAGAAGTT ACAACATAAA ACCAGGAGAT GTTGTAAGAA TTTTGGATAC TCCAGAAAAT
TTTGCATATG TATTGGGTGA AGTCAACAAA CCTGGTATAA TACAACTTAC CGAAAACACA
ACGGTATTGC AGGCGATAAT TCAGGCAGGA TACTTTGCTC AAAAAGCAGC ACCAGCGAGT
GTATGGCTTT ACAAAGGTGG AGTGAATGGG AAACCTGTTA AAGTCAATTT GAGTGCAGCT
ATTTCAGGTG GCACACTAAC GGACAATCCG ATAGTTGAAC CTGGTGATGT GATATACGTC
CCATCAGACA TATTCAAGAG CGCGCTTGAA TGGATACCAA TTATAAATAA TCTTATAACT
TTCTATAACA ACGTTAGCGG ATTATTTAAA TAA
|
|---|
| Protein sequence | MKKSLLACLV ILLVVSVFAY KVRVGDTIAI EVFNQPSLSR TVEVANDGTI AYPFAGNIKV
EGKTVDEIKT LIEPYVKNIL KDPIITVYVV RYAPMNIYIQ GVLNRVFDIS LIPNLTLSKL
FSYLSIDKNS PIDFSNITVT RDGKSTKFDM IPYFYEGKIT NDIVLRESDI IYFPPFKYDM
PIQVTGAYTL LTPYEPGMTL KYLLIKLGVI DKTIAKIESS VLTVDGKSQT VNLEDVIAGK
VDYKLSAGAS LYIPKRQERF VYVVGFVPSS GIKTFSVEED MNLALALAKA GGISKENEKW
VEKIRITSPN GKVEDYHPAI LSNASLVKLE IGSIVEVIKY QEFKVYLKGD ISTGIIVFQP
DESKTLEVLL TKIGGIKTSE YKWIESVKVN NKAVDISKAS EIILNNNDVV EIRRYPEFKV
YLTGDFKTGI ITFEPDEPKT LSGLLTKIGG IQTDQIKWIQ SIKINDKEVD FNNLDKYILS
NNDVVNIKKY PEFYVYVQGL ANIKGKVYFE PQEAKTLKLL IAKVGLPSED VENEGKAIIN
NNQELNLKDV IYNNKDYELS LGDIIQIVYE PFVVNTIGTN AGVIQLSYKE PRTLAYLVKK
LGISQPESID SITLIRNGKE INYSVNEIIY EKVNVPLEKY DTVVVKRAEN NAVYLTGDVS
AYVTFDYNEP ITIQKILAKV GLNDLRRIDK ITLGDKEIDL RENKIIDKGS ILNVSLKRPL
FVTAMGYIKT TGRVQFDYYE TPDLKTLFAK LGGLVIGPEL YYTSDKVVVM RDGKVLAQYD
AEKIYKGIEN AMLEDGDFVY VTTKEPNYVY VFGKGVQNGL VKFNASEEFD LRTLISKIGG
IKEGISNKIN IIVNGEIKTI QWTELTNIQL ENGAILTFDV DRENYIYLIT ADGKPNMIYS
DKAITLYELL TKFGVNKNYR KLELLSGTEK STIELKDISQ ARSYNIKPGD VVRILDTPEN
FAYVLGEVNK PGIIQLTENT TVLQAIIQAG YFAQKAAPAS VWLYKGGVNG KPVKVNLSAA
ISGGTLTDNP IVEPGDVIYV PSDIFKSALE WIPIINNLIT FYNNVSGLFK
|
|---|
| |