| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mboo_1313 |
|---|
| Symbol | |
|---|
| ID | 5411958 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Methanoregula boonei 6A8 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009712 |
|---|
| Strand | + |
|---|
| Start bp | 1338102 |
|---|
| End bp | 1339550 |
|---|
| Gene Length | 1449 bp |
|---|
| Protein Length | 482 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640868545 |
|---|
| Product | 7-cyano-7-deazaguanine tRNA-ribosyltransferase |
|---|
| Protein accession | YP_001404474 |
|---|
| Protein GI | 154150856 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0343] Queuine/archaeosine tRNA-ribosyltransferase |
|---|
| TIGRFAM ID | [TIGR00432] tRNA-guanine transglycosylase, archaeosine-15-forming
[TIGR00449] tRNA-guanine transglycosylases, various specificities |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.258751 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGATCA CCTTCGAAAG TCTGGACAGC GATATTGCAG GACGCACTGG CAAACTGGGC
GCGGGAAAAC GGATCATAAA GACCCCCGCG CTGCTGCCGG TCATCAATCC CCACCTGATG
CTGGTCACCC CCAAAGAGCT CCGAGCCATG GGAGTCGAGG CCCTGATCAC CAATGCCTAT
ATCTTTTCCC AGAGCCGGCA ATATAGCGAG CGGGTAAAGG AAGAAGGTCT GCACAAACTC
CTTGACTTTG ATGGGCTGAT CATGACCGAC TCCGGCTCGT TCCAGCTCTC GGTGTACGGC
CAGGTTTCAT TCACGAATAA ACAGACCCTC TCCTACCAGC GGGATATCGG AAGCGACATC
TGGGTGCCGC TCGATATTCC CACCTCCCCG GATGCGGACA GGCCAACAAC AGAACGGGAG
CTTGCGATCA CTATGGAGCG CCTTCGCGAG GCAAAGGAAC TCTTCGGGAA CGATGCCCCG
CTGGCCGGGC CGGTGCAGGG CGGGATCTTC CCGGACCTCC GCGAGCGGGC AGGAAAGGAG
GTCGGGGATC TTGGCTTTTC CTTCTGTCCC ATCGGCGCAG TAGTTCCCCT CATGGAATCC
TACCGGTACC GGGAACTTGT TGACGTGGTA ATGGCAGCAA AGAGCACCAT TCCCCGCTCC
GCGTGTGTTC ACCTCTTCGG GGCCGGTCAC CCGGCCATGT TTGCACTCGC CGCTGCAATG
GGATGCGACC TATTCGATTC CGCCGCGTAC GCGCTTTATG CCAAGGATGG ACGGTACCTC
ACCACCCACG GGAGCTTCAG GATAGACGAA CTCACCGATC TTCCCTGCGC ATGTGCAGTC
TGCCGGAGCC ATACAGCCGA GGAACTCTGC ACAGCAAAGG ACCGGACACG CCTTCTGGCC
CTCCACAACC TGGCAGTCAC CCTTGCCGAG ATCTCGCGGA TCCGGCAGGC AATAGCTGAC
GGGACGCTCT GGGAGCTTGT TGACGAGCGC TGCCGGACCC ACCCGCAGCT CCTCTCGGGA
TACCGCAGGC TCCTCTCCCA CGCAGCTGAC CTCGAACTTT ATGACAGGGC CTCCAAAAGG
CGGTTCTTCT ACCGGGGAGA CGAGAGCTGT GCCCGGACCG AGGTGCTCCG GTACCAGAGG
CAGCTTGACC GTCTCCGCCT CGGGAAAACC GTGCTCGTGG CCTGCGATGG GAAGGAGCGC
GAGGGTTATG ACGACGTCCT CTTCTTCAAG CCCCCATTTG GTCCCTACCC GCCAGCCTTA
AAGGAAACTT TTCCCATTGG CCCGGCCGAG ATTCCCCCGT GGGACGAGGC CATGGTCCGG
CAGGGCTGTC GTGGCATACG GATGCTTGCC GAGAGCCATA AGGAGAGCAG AATCATGGTC
TCGGGCCTTC TTAACTGGGA GGAGATCTTT ACACAGGAAG CCGGCGATGC AGCGGAGCTG
GTGAGATGA
|
|---|
| Protein sequence | MAITFESLDS DIAGRTGKLG AGKRIIKTPA LLPVINPHLM LVTPKELRAM GVEALITNAY
IFSQSRQYSE RVKEEGLHKL LDFDGLIMTD SGSFQLSVYG QVSFTNKQTL SYQRDIGSDI
WVPLDIPTSP DADRPTTERE LAITMERLRE AKELFGNDAP LAGPVQGGIF PDLRERAGKE
VGDLGFSFCP IGAVVPLMES YRYRELVDVV MAAKSTIPRS ACVHLFGAGH PAMFALAAAM
GCDLFDSAAY ALYAKDGRYL TTHGSFRIDE LTDLPCACAV CRSHTAEELC TAKDRTRLLA
LHNLAVTLAE ISRIRQAIAD GTLWELVDER CRTHPQLLSG YRRLLSHAAD LELYDRASKR
RFFYRGDESC ARTEVLRYQR QLDRLRLGKT VLVACDGKER EGYDDVLFFK PPFGPYPPAL
KETFPIGPAE IPPWDEAMVR QGCRGIRMLA ESHKESRIMV SGLLNWEEIF TQEAGDAAEL
VR
|
|---|
| |