Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mboo_0787 |
Symbol | |
ID | 5411922 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Candidatus Methanoregula boonei 6A8 |
Kingdom | Archaea |
Replicon accession | NC_009712 |
Strand | - |
Start bp | 757347 |
End bp | 759032 |
Gene Length | 1686 bp |
Protein Length | 561 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640868011 |
Product | PKD domain-containing protein |
Protein accession | YP_001403948 |
Protein GI | 154150330 |
COG category | [R] General function prediction only |
COG ID | [COG3291] FOG: PKD repeat |
TIGRFAM ID | [TIGR01451] conserved repeat domain |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.605081 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 0.12809 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAATACA GTACTATTCT TTCCCTGGTA CTCCTGCTCT GTCTTCTCTG CCTGCCGTTT GCAACCGCAG AGTCACAGGC CGGGACTGCC ACCCTCTCTT CCGGGGCATC CGGTATTACG GCGTTAAGAG CCTCGGACAT ATCCGGTACC GACACCACGA CCGAGCCCAC GATGGAGCCG GTCACGGTGC CAACCGAGGA GCCGACCATT GCTCCTACAA CTGAAGTGAC CACGCAACCA ACCGAGAATC CAACGATAGC GCCCACAACT GAAGAGACCA CTGTGCCGAC CACAGAGACG CCAACCCTCG CTCCAACGAC CGAGGAAACT TCTGTACCTA CGGTAATGCC GACGGATACT GTCACAACGG CTGAGACCAC CTCACCGGTC CCGGGGCCGT ACGCGCCGGT TGCCAGTTTT ACGGCCTCTC CTACCTCCGG TAACGGACCG CTTACCGTCC AGTTCACGGA CACATCCATT AACAGCCCGA CCATGTGGTA CTGGGACTTT GGCGATGGTT CCAGTGCAGG TACGACTGCC TCACCAGCCC ACACCTATAC AGACCCGGGC ACATACACGG TGACCCTGAC TGCAAGCAAC CAGTACGGCT CGGATACGAT CACCCAGTAT GATATTGTTA CGGTGAACGG GCAGGTAATG AGCAACGGCG CGATCTATGC CCAGTCCGTC CCGTACGGGG CTACGATCTA CGTAAACGGC GATAGTTACG GGACTGCGCC GGTCACCATC AACAACCTTT TTGCGGGCAC CTATTCGGTT ATGGCCTACA TGAGCGGCTA CACAACCGAT GTGCGCACGA TCACGGTATA CTCCGGCCAG ACCACCGGAT ATTACCCGTC CCTCCAGCCC TCGCCCAACC CGCCGGGAAC GCTCGGCTCC ATCTACGCCC AGTCATCCCC TGCCGGGGCA ACCATCTACG TGAACGGGGT ATCGTACGGG ACCTCGCCGC GCACGATCAA CAACCTGCTC CCCGGCACGT ACTCGGTCAT GGCCTACCTG AGCGGCTATG CCGCAGACTC CCGGACCATC ACGGTTACTT CGGGCCAGAC TACCAGTTAC TCGCCGGTCC TCCAGTCCCT GCCCAATCCG GCAAATACCG GCGCAATCTT TGCGCAGTCG ACCCCGGACG GCGCAGCGAT TTATCTAAAC GGCGTATACC AGGGTGTCTC CCCGCTCACC ATCACGGGTC TTTCCCCCGG CACCTACACG CTCAAGGCCA CGCTGAGTGG GTACTCCGAT GATGTGCAGC GGATAACGAC AAGCGCCGGC CGGGTCTCGT TTTATTCCCC GGCGTTCTAT CCGTCCCCGC AACCCGTTGG CTCCGGCCAG GGGATAATCG CGGTGTACGC AAACGTGAAC GGCGCCCCGG TATATTTCGA CAATGCCTAT GAAGGAAATG TCACGAGCGG CGTACTCTAT GTGACCGTGT CAACTACAGG AACACCTGTC CAGACCGTCC GGGTCGAGAG CACCGGCTAT ATCCCGTATA CCACAAGCCT CACGCAGTGG CCCGGGAACG GCGAGACCGT GAAGGTCCAG GCAACGCTTG TTCCTGCACC GGTCCCCACG ACCAAAAAAT CGCCCGTTCC CACACTACTT TCCCTGGGTG CACTGCTGGG TGCCGGGGCC CTTGTCCTCC TCGCACGGCA GCAGAAGAAA CGTTAA
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Protein sequence | MKYSTILSLV LLLCLLCLPF ATAESQAGTA TLSSGASGIT ALRASDISGT DTTTEPTMEP VTVPTEEPTI APTTEVTTQP TENPTIAPTT EETTVPTTET PTLAPTTEET SVPTVMPTDT VTTAETTSPV PGPYAPVASF TASPTSGNGP LTVQFTDTSI NSPTMWYWDF GDGSSAGTTA SPAHTYTDPG TYTVTLTASN QYGSDTITQY DIVTVNGQVM SNGAIYAQSV PYGATIYVNG DSYGTAPVTI NNLFAGTYSV MAYMSGYTTD VRTITVYSGQ TTGYYPSLQP SPNPPGTLGS IYAQSSPAGA TIYVNGVSYG TSPRTINNLL PGTYSVMAYL SGYAADSRTI TVTSGQTTSY SPVLQSLPNP ANTGAIFAQS TPDGAAIYLN GVYQGVSPLT ITGLSPGTYT LKATLSGYSD DVQRITTSAG RVSFYSPAFY PSPQPVGSGQ GIIAVYANVN GAPVYFDNAY EGNVTSGVLY VTVSTTGTPV QTVRVESTGY IPYTTSLTQW PGNGETVKVQ ATLVPAPVPT TKKSPVPTLL SLGALLGAGA LVLLARQQKK R
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