| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mboo_0513 |
|---|
| Symbol | |
|---|
| ID | 5411095 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Methanoregula boonei 6A8 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009712 |
|---|
| Strand | - |
|---|
| Start bp | 494678 |
|---|
| End bp | 495646 |
|---|
| Gene Length | 969 bp |
|---|
| Protein Length | 322 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640867730 |
|---|
| Product | pseudouridylate synthase |
|---|
| Protein accession | YP_001403674 |
|---|
| Protein GI | 154150056 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0130] Pseudouridine synthase |
|---|
| TIGRFAM ID | [TIGR00425] rRNA pseudouridine synthase, putative
[TIGR00431] tRNA pseudouridine 55 synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCACAA CGGGAGACTG CGAAAAAGCA GAAAAAAAGC CTGCCATGCC GCTCCGGCAT
GGCGCAGGCA TCATCGTGAT CGATAAGCCC CGGGGCCCTT CGAGCCACCA GGTTGCAGCG
TGGGTGGGAA CGATGCTCGG CTGCCCGGTG GGCCACGCGG GCACACTCGA CCCCCAGGTT
TCGGGCATCC TCCTTGTCAT GCTCGGTAAC GCCGTGCGCC TTGCGCCGCT GCTCTTAAAA
CACGACAAGG AGTACATCTG CCTGATGCGG CTGCATAAAG AGGTTGACCG GCAGCGCATC
GATGCGATGG CAGAGGAATT TTCCGGCCGG ATCTACCAGC GCCCCCCAAG GAGAAGCGCG
GTCAAGCGCC TCCTGCGCAT CCGTACCATC AAAAAACTGG AGATCCTCGA CGTTCAGGGC
CGGCTGGTGC TCTTCAAGGT GGAGTGCGAT GCGGGCACCT ACATCCGCTC GCTCTGCCAC
CACATGGGCC TTGCCCTTGG CACCGGTGCG CATATGCAGG AACTGCGCCG GACACGTTCG
GGAGCCTTTG ACGAGCAGTG CATGCACACG CTTCACGCGC TGCAGGATGC CTGCTGTGCT
GCGGCCGCCG GGGACCGGGT CGCACTGGAC TCGATGATCG TCTCAGTCGA TGCCGCAGTC
CCCGATCTCC CGGCGGTTAC CGTGCGCGAT ACCGCAATCG ATGCGCTCTG CCATGGGGCA
GCGCTTGCAG GGGTGGGAGT TATAGATTGC GACGAGTTCA GGAAAGATCA AATCGTCGCT
GTCCTCTCCC AGAAACGGGA ATTTATCGGC CTTGGTAAAT CACTCGCCCC GTCCGCCGCG
TGGAAACCGG GGACACCCGG CCTTGTCGTT GCCATGACCA CGGTTTTTAT GGCGCCGGGC
ACCTATCCCC GGGGCTGGAA GAAACACAGC AGGCCGGAAC AGGCCGGTTC TGCCCCTGCG
AAAGGATAG
|
|---|
| Protein sequence | MTTTGDCEKA EKKPAMPLRH GAGIIVIDKP RGPSSHQVAA WVGTMLGCPV GHAGTLDPQV
SGILLVMLGN AVRLAPLLLK HDKEYICLMR LHKEVDRQRI DAMAEEFSGR IYQRPPRRSA
VKRLLRIRTI KKLEILDVQG RLVLFKVECD AGTYIRSLCH HMGLALGTGA HMQELRRTRS
GAFDEQCMHT LHALQDACCA AAAGDRVALD SMIVSVDAAV PDLPAVTVRD TAIDALCHGA
ALAGVGVIDC DEFRKDQIVA VLSQKREFIG LGKSLAPSAA WKPGTPGLVV AMTTVFMAPG
TYPRGWKKHS RPEQAGSAPA KG
|
|---|
| |