Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Oant_3036 |
Symbol | |
ID | 5381394 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ochrobactrum anthropi ATCC 49188 |
Kingdom | Bacteria |
Replicon accession | NC_009668 |
Strand | + |
Start bp | 343018 |
End bp | 344748 |
Gene Length | 1731 bp |
Protein Length | 576 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640835713 |
Product | RNA-binding S4 domain-containing protein |
Protein accession | YP_001371573 |
Protein GI | 153010359 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.246075 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACTAAAG ATGATGACAA CAAGGATGGC AAGCGTCCGC ATGGCCGTGG AGGGCGCTCC GATCGTCCCG CTCGGCCAGA TCGTGACACT CGTCCGCGCC GCGATGACGG CGGACGTGAC AAGCCACGTA AATTCGGACC GCGCGACGCC GAGGGGCAAG AGGACACGGG CGAACGTATC GCCAAGCGTC TGGCACGAGC AGGCATAGCT TCACGCCGTG AAGCGGAAAC GATGATCGCT GCTGGCCGTA TTGCCGTGAA TGGCAAGGTG CTTGAGAGCC CTGCGGTCAA TGTCAAGCGC ACGGATATTA TTACGGTCGA CGGCAAGCCA TTGAAGCAGA CCGAGCGTAC CCGTCTCTGG CTTTATCACA AGCCTGCGGG TCTTGTGACG ACCAATCGCG ATCCTGAAGG TCGCCCAACG GTTTTCGAGG CACTGCCTGC CGAGATGCCA CGCGTACTTT CAGTTGGTCG TCTCGACATC AATACCGAAG GTCTGTTGCT GCTCACCAAT GATGGTGGTC TGTCGCGCGT TCTGGAGCTG CCTTCCACCG GCTGGCTGCG CCGCTATCGC GTTCGCGCCC ACGGCAAGGT CACACAGGTA CAGCTTGATG AGCTGAAGAA CGGCATTGCC GTCGATGGCG TCTTCTACGG CAGTATTGAA GCAACGCTTG AGCGTGAGCA GGGTGCCAAT GTCTGGATCT CTATCGGATT GCGCGAAGGC AAGAACCGTG AAGTAAAGAA TATTCTGGGC GCTCTTGGTC TGACTGTTGG ACGTCTTATC CGCGTTTCAT TCGGTCCTTT CCAGCTCGGT GATCTTGAAG AAGGTGCAGT CCGCGAAATC AAGGGACGTA TCCTGCGAGA TCAGCTTGGT GACAAGTTGA TTGAGGATTC AGGCGCGGAT TTCGATGCGC CTGTTCTGAA CGAGTTTTCC AATGCCGCTG TTCAGGGACG GACTCGTCGC GACGTGGAAG ATGAGGGCGA GGAAGGCGAA CGCCGGCGTG GCCCGCGCGA ACGTGAATGG ATTTCCAGCA GTCCTCAGCG TCGTCGCGGT CGCGACGACA AGGGAGCCGA AAAGGTTGAA CCGCGTCGTC GCGGAAACGC CAATGTCTGG ATGGCTCCAG GTGCGCGTCC AAAGGGCGAA AATGCGGCTG CCAAGCCCGC CCGTGTCGAA CGTCAAGTTC CGCATCGTTC AGCGAAATTC AGTGGCGATC TGCAGATGCG CCCGCGTCGG GCTGGTGATG AGGAGCAGGG ACGCGACGAA GGTGGTGAAC GCCGCTATAA CAAGCGACCG GAAGGCCGCT TTGATAAGGA CGCTCGTCCA CAGCGTCCGC GTCCGGAAGG AAACCGCTCG GAAGAGGGAC GTCCAGAGCG CCGTGAGCAG CGTGAGGATG GACGCAAGGA GCGTCGTCCC GGCAAACGCG AGCGTGCAGA ATTGCGCGAC GCGGAAGGCC GGACTGTAGA GCACGGTAAG GGCGGCTTCG AGGGCCGCAA GACGGGAAAG CCGGGCGGAC CGCGTGGTGA AGGCCGTTTT GGTGCATCCG ATCGCGATAC GCGCTCAGGC CCGCGCAGCA GCGGACCGGG TAATAAATCT CGTCGTTTTG ATGATGGTTC GAAGGATGGA CCGCGTCGTG GACCAGGAAA CAAGCCGGGT GGTAAACCAG GTGGAAAGCC GGGTGGCAGC AAGTCAGGCG GTGGCAGAAC TGGAGGCGGT GGTGCGGATC GTCGGCGGTA G
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Protein sequence | MTKDDDNKDG KRPHGRGGRS DRPARPDRDT RPRRDDGGRD KPRKFGPRDA EGQEDTGERI AKRLARAGIA SRREAETMIA AGRIAVNGKV LESPAVNVKR TDIITVDGKP LKQTERTRLW LYHKPAGLVT TNRDPEGRPT VFEALPAEMP RVLSVGRLDI NTEGLLLLTN DGGLSRVLEL PSTGWLRRYR VRAHGKVTQV QLDELKNGIA VDGVFYGSIE ATLEREQGAN VWISIGLREG KNREVKNILG ALGLTVGRLI RVSFGPFQLG DLEEGAVREI KGRILRDQLG DKLIEDSGAD FDAPVLNEFS NAAVQGRTRR DVEDEGEEGE RRRGPREREW ISSSPQRRRG RDDKGAEKVE PRRRGNANVW MAPGARPKGE NAAAKPARVE RQVPHRSAKF SGDLQMRPRR AGDEEQGRDE GGERRYNKRP EGRFDKDARP QRPRPEGNRS EEGRPERREQ REDGRKERRP GKRERAELRD AEGRTVEHGK GGFEGRKTGK PGGPRGEGRF GASDRDTRSG PRSSGPGNKS RRFDDGSKDG PRRGPGNKPG GKPGGKPGGS KSGGGRTGGG GADRRR
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