| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPA7_5709 |
|---|
| Symbol | aspC |
|---|
| ID | 5353737 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas aeruginosa PA7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009656 |
|---|
| Strand | - |
|---|
| Start bp | 5879235 |
|---|
| End bp | 5880416 |
|---|
| Gene Length | 1182 bp |
|---|
| Protein Length | 393 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 640814754 |
|---|
| Product | aspartate transaminase |
|---|
| Protein accession | YP_001351028 |
|---|
| Protein GI | 152989013 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0436] Aspartate/tyrosine/aromatic aminotransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCTATT CCGACCTCAC CCAACGTATC GCCGGCGACG GCGCCGCTGC CTGGAACATC
CACTATCGCG CGCTGGCGCG GGTCGAGCAG GGCGAGGACA TCCTCCTGCT GTCGGTCGGC
GACCCCGACT TCGACACCCC GGCGCCCATC GTCCGGTCGG CCATCGACAG CCTGCTGGCC
GGCCACACCC ACTACGCCGA GGTGCGCGGC AAGCGCGCCC TGCGCCAGCG CATCGCCGAG
CGCCACCGTC GGCGTAGCGG CCAGGCGGTG GACGCGGAGC AGGTGGTGGT GCTGGCCGGC
GCCCAGTGCG CGCTGTACGC GGTGGTGCAG TGCCTGCTGG ATCCGGGCGA CGAGGTGATA
GTCGCCGAGC CGATGTACGT CACCTACGAA GCGGTGTTCG GCGCCTGTGG CGCGCGGGTG
GTGCCGGTGC CGGTGCGCTC CGAGAATGGC TTCCGCGTGC AGGCCGGGGA GGTCGCCGCA
CTGATCACCC CGCGCACGCG CGCGATGGCG CTGAACAGCC CGCACAACCC GTCCGGCGCC
AGCCTGCCGC GGGCCACCTG GGAAGCCCTG GCCGAGCTGT GCAGGGCTCA TGACCTGTGG
ATGATCTCCG ACGAGGTCTA CAGCGAACTG CTGTTCGACG GCGAGCACGT CAGTCCGGCC
AGCCTGCCGG GGATGGCCGA GCGCACCGCG ACCCTGAACA GCCTGTCGAA GTCCCATGCG
ATGACCGGTT GGCGGGTCGG CTGGGTGGTC GGCCCCGCGG CGCTCTGCGC GCACCTGGAG
AACCTCGCCC TGTGCATGCT CTATGGCTCG CCGGCGTTCA TCCAGGATGC CGCCTGCACC
GCGCTGGAAG CGCCGCTGCC GGAGTTGGAG GTGATGCGCG AGGCCTACCG CCGCCGCCGC
GACCTGGTGC TCGAATGCCT GGCCGACAGC CCCGGCCTGC GTCCGTTGTG CCCGGACGGC
GGCATGTTCG TGATGGTCGA TATCCGCCCC ACCGGACTTT CCGCCCAGGC CTTCGCCGAC
CGCCTGCTGG ACCGCCATGG CGTCTCGGTG CTCGCCGGCG AAGCCTTCGG CCCGAGCGCC
GCCGGGCATA TCCGTCTCGG CCTGGTGCTT GGTGCCGAAC CGCTGCGCGA AGCCTGCCGG
CGCATCGCGC TGTGCGCCGC CGAGTCGCTC GGCCAGGCCT GA
|
|---|
| Protein sequence | MRYSDLTQRI AGDGAAAWNI HYRALARVEQ GEDILLLSVG DPDFDTPAPI VRSAIDSLLA
GHTHYAEVRG KRALRQRIAE RHRRRSGQAV DAEQVVVLAG AQCALYAVVQ CLLDPGDEVI
VAEPMYVTYE AVFGACGARV VPVPVRSENG FRVQAGEVAA LITPRTRAMA LNSPHNPSGA
SLPRATWEAL AELCRAHDLW MISDEVYSEL LFDGEHVSPA SLPGMAERTA TLNSLSKSHA
MTGWRVGWVV GPAALCAHLE NLALCMLYGS PAFIQDAACT ALEAPLPELE VMREAYRRRR
DLVLECLADS PGLRPLCPDG GMFVMVDIRP TGLSAQAFAD RLLDRHGVSV LAGEAFGPSA
AGHIRLGLVL GAEPLREACR RIALCAAESL GQA
|
|---|
| |