| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_3544 |
|---|
| Symbol | |
|---|
| ID | 5324432 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | + |
|---|
| Start bp | 3750240 |
|---|
| End bp | 3751202 |
|---|
| Gene Length | 963 bp |
|---|
| Protein Length | 320 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640792494 |
|---|
| Product | uroporphyrin-III C/tetrapyrrole methyltransferase |
|---|
| Protein accession | YP_001329195 |
|---|
| Protein GI | 150398728 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0313] Predicted methyltransferases |
|---|
| TIGRFAM ID | [TIGR00096] probable S-adenosylmethionine-dependent methyltransferase, YraL family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCGGGG CCACGAGGGA TTGGAAGGCG GCGTTGGAGA AGCAGCAATC GGCGGAAGTG
TCGGAAAAGG AACGGCAACG CGGCTTTCGC CTGCACAATG CGAATATTCC CGCGCGTCCG
CTGGAGCCGT GCCTTTATCT CGTCGCAACG CCGATCGGCA ATCTCGGCGA CATCACCCTC
AGAGCCCTCG AGACAATTGC CGCGGCGGAC GTCCTCGCCT GCGAAGACAC GCGCGTGACG
CGGGTCCTGC TCGACCGCTA CGGCATCGTC AACCGGCCTA TCGCCTATCA CGAGCACAAT
GCCGCCGAGG CAGGTCCGCG CCTGCTTGCA GCGCTTGACG GCGGCAAATC GGTGGCACTC
GTTTCCGACG CAGGCACGCC GCTCGTCTCC GATCCTGGCT ATCGTCTGGC GCAGCAGGCG
GTCGAGGCCG GGTACCGGGT GGTGCCGGTG CCGGGACCCT CGGCGCCGCT TGCGGCTCTC
GTCGGTTCCG GCCTTCCGAG CGATGCCTTC CTCTTCGCCG GCTTCCTGCC GGGTAAGGAC
AAGGCCAAGC GCGACCGGCT TGCGGAACTC GCCAACATCC CGGCCACTCT CATCTTCTTC
GAGTCCCCGC ATCGCATCGC CGCGACCCTC ACTGCTGCCG CCGAGGTTCT CGGCGAAGAC
CGGAGGGCGG CCGTCTGCCG CGAACTGACC AAGGCTTTCG AGGAGTTCCG CCGAGGCACG
CTCGGCGAGC TCAGGACAGC TTACGACGAA GGCGGCAATG TGAAGGGCGA GATCGTCCTG
GTGGTCGGTC CGCCCGAGGC AAGGCCGCAG CCGGAGGCAG CCGATATCGA CGCGCTCCTC
AGGGCGCTTG CCCGAGATCT GCCGATGGGC AAGGCAGCGA CGGAGGCCGC GCATCGCACA
GGACTTGCAC GCAAGGCGCT TTACGACCGG CTCCTCGAGC TCAAGGACAG CGATGAAGGC
TGA
|
|---|
| Protein sequence | MIGATRDWKA ALEKQQSAEV SEKERQRGFR LHNANIPARP LEPCLYLVAT PIGNLGDITL
RALETIAAAD VLACEDTRVT RVLLDRYGIV NRPIAYHEHN AAEAGPRLLA ALDGGKSVAL
VSDAGTPLVS DPGYRLAQQA VEAGYRVVPV PGPSAPLAAL VGSGLPSDAF LFAGFLPGKD
KAKRDRLAEL ANIPATLIFF ESPHRIAATL TAAAEVLGED RRAAVCRELT KAFEEFRRGT
LGELRTAYDE GGNVKGEIVL VVGPPEARPQ PEAADIDALL RALARDLPMG KAATEAAHRT
GLARKALYDR LLELKDSDEG
|
|---|
| |