| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_3242 |
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| Symbol | |
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| ID | 5324121 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sinorhizobium medicae WSM419 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009636 |
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| Strand | - |
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| Start bp | 3416868 |
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| End bp | 3420437 |
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| Gene Length | 3570 bp |
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| Protein Length | 1189 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640792190 |
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| Product | double-strand break repair helicase AddA |
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| Protein accession | YP_001328901 |
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| Protein GI | 150398434 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
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| TIGRFAM ID | [TIGR02784] double-strand break repair helicase AddA, alphaproteobacterial type |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGGAGTG ATGCGACCGG ACCGGAGGAG AGAACCCCGG AAGGATGGCT CGACTGGACG
ACGGAACGGC AGGCGCTCGC CTCCGATCCC GCGCGCTCCG CTTGGGTTTC AGCCAATGCG
GGCTCCGGCA AGACCCATGT GCTCACGCAA CGCGTCATCC GGCTGCTGCT CGCGGGTTGC
CGGCCATCTG CCATCCTATG CCTGACCTAT ACGAAGGCAG CCGCCTCCGA GATGTCCAAC
CGTGTGTTCG AGAAGCTCGC CGAATGGGCG ACCCTCGACG ATGCTGCGCT CGAAAAACGG
ATCGAGGCGA TCGAAGGCAA GCGACCGGCC ACCGGCAAGA TCCAGGAGGC GCGCCGGTTG
TTTGCGCGGG CCCTGGAAAC GCCGGGCGGC CTGAAGATCC AGACCATTCA TGCCTTTTGC
GAGGCCCTCC TGCACCAGTT CCCGCTGGAG GCCAATGTCG CCGGGCATTT TTCCGTTCTC
GACGATCGAG CCGCCGCGGT CCTGCTTGCC GATGCGCGCA GGGCTCTCCT AACCGCCACG
GCGGCGGCAA ACGACAGGGA GTTGGCGGCG GCCTTCGCAA CGGTCCTCGA ACTCGCGGAC
GACACCGGGC TCGAAAAGCT GCTCGCGGCG ATCGTCGCCA ATCGGGCGCA GATCCAGGCC
TTTCTGGACC GCGTCTCGGG TCGCGGCGGC CTGGACACGC ATCTGCGCGC GGCCCTCGAC
CTCAACCCCG GCGATACGCC CGAGGCCATC ATGGCCGCAG CCTGGCCGCT CGCAGGCCTC
AATGGCGCCG CCCTAGTCGA CTATATCGGT CTTGCGTCAC GCCTTGGCGG CACCAAACCT
ACGGCCATCG CAGAAGGCTT TCGGACCGTC CGTGCCATCG GGGATCCGGC GGCACGCTAC
GACCGCCTGC TTGAAACCTT CCTCAATGGC GGTGGCAAGC CGAAGGCGGA TTCGGCCTTT
CTGAACGCAG CCATGCGTCG TGAAGCACCG CATCTCGAGA GCCTTATCGA AGAGGCACGC
AGCCATCTGC TTGCCTGCGT GGACCGTCTG AGCATCGTCA GAATGTATGA GGCGACCCGC
GCCGCCCTCG TCCTCGCCGA AAGGCTCAAC CGCGACTACG AGTCGCTCAA GAAGGCGCGC
AGCCAGCTCG ATTTCGAAGA CCTGATCAAC CGCACGGCGG CATTGCTTGC GAGAAGCGAC
GTCGGAGCCT GGGTACACTA CAAGCTGGAT CAGGGAATAG ACCACATCCT CGTCGACGAA
GCACAGGATA CGAGCCCGGC GCAATGGACG ATCATCCAGT CGCTGGCGGC GGATTTCTTC
GCCGGCGATA CGGCGCGTGC GGACGACCGC ACGATTTTTG CAGTCGGCGA CGAGAAGCAG
TCTATCTATT CTTTCCAGGG CGCGCGGCCG GAACGCTTCT CGCGCGAGCG TACGCTGACC
GAGCGACGGG TGCGCGCGGG CAACAAGCGC TTCAGCCCGA TCCGCCTGCA GCTTTCCTTC
CGCTCGACGG TTGACGTGCT CTCCGCCGTC GACACCGTGT TTGCAAACAT CGGAAATGCG
AGAGGCCTGA GCGCCAGGGA TGAGGCGATC GTTCATGCCT CGAACCGGAT CGGGCAACCC
GGCGCCGTCG ACCTCTGGGA GGTGATCGCG CCCGAGCCGG CGGCTTCGGA CGAGGACTGG
ACCGCTCCAT TTGACGCCAC CCCCGAGCGC GCGCCGGTGA ACATCCTTGC CCGGCGCATT
GCAGCCGTCC TCGAAGATTG GATCGGCAAG GAGACCGTGA TCGAGAAAGG CGTGCGCCGA
GCCATGCGGC CGGGTGACGT CATCGTGCTG GTCCGCAAGC GCGATGCCTT CGTCAATGCG
CTGATGCGCG CGCTCAAGCG GCGGGGCAAT ATTCCGGTCG CCGGTGCGGA CCGGCTGGTT
CTGACGAGCC ATATCGCCGT GCAGGACCTG ATCGCGCTCG GCCGGTTCGT GCTTCTGCCC
GAGGATGATC TGTCATTGGC GGCACTCTTC AAAAGCCCGC TCGTCAATCT TTGCGAAGAC
GATGTCTTCG AACTCGCCGC GCGCAGGAAC GAAGGCGAAA GTCTCTGGCA CCGGCTGCAG
CAGGCGGGCG TGGAGGAGAC GAGCCGTTAC AATGCAACGG TGCGGAAGCT TGCCGCCTTT
TCCACCCTTT CGCGGGAGCT ATCGCCGCAC GATTTCTATG CCCGCATTCT CGGCGCCCAT
GGCGGCCGGC GTGCCTTCCT GGCGCGGCTC GGCAGCGAGG TCAGCGATAT CCTGGACGAG
TTCCTGACCT TCGCCCTTGA TCACGAAAGG AGCGGCCTGC CTGGCCTGCA GGCTTTTATC
TCGACGCTGG AGATCGAAGC GCCGACGGTC AAGCGCGAGC AGGACAAGGA ACGCGACGAG
GTGCGCGTCA TGACGGTGCA TGCCGCAAAG GGCCTGGAGG CACCGGTCGT CTTCCTCGTC
GATGGCGGCG GAGAAGCCTT CGTCCGCCAG CAGGTTTCGG ACTTGCGCTT CCTGGAGAAA
CCGCAAGCCG ATCAAACCCT GCTCACCGTT CCGGTCTGGC GTGCGCCGGG CTCGGCGCCG
AACTCGCTCA TCGCCGACGA TAACGAGCGA CTGAAGATGC TTGCGGAGGA GGAATATAGG
CGCCTCCTCT ATGTCGGCAT GACGCGCGCA GCCGACCGCC TGATCGTCTG CGGCTATCGC
GGCCAGCGGC AGAATGTCGA TACCTGGCAT TCGATGGTAC AGGGAACGCT GGCGCAGGAC
CTCATGGGCC GCGCGACGCC GAGGCTTTTC CGCGCCGCAG GTGAGGAATG GCAGGGCCTT
GCCTGGCGCG AGACGCATGT GCCGCGCGAC CTTCCGGCAG CCGACGGCGC CTCTGGAGAG
CCTGAACAGG CCAAAGCCGG TCTGCCGAGG GCGCTGTTCA CGGCGCCGCC CCCCCCGCGG
CGGCTTCCGC GACCGCTTGC CCCATCCGGT ACGGCCATCG CGATTGACGA GCCGGACGGC
TCGTCAATCG TCGGCTCGGC GCTCTTCACC GGCAAGAACG CGCCGAAGTT CTCAATGCTG
CGCGGTGCGA TCCTGCACCG GCTGTTGCAG GTGCTTCCCT CCATCGATGC CGTGGAACGT
ACGGCCGCGG CTGAGCGCTA CCTCGCCCGT TCCGTGCCGC GATGGCCCGA GGCGGAACGG
CTTGCACTCG CCGCCACCGT TATGGACGTG CTCGGCCATG CGGAGCTGCA GCCGCTCTTC
GGTGAACACA GCCGGGCAGA GGTTTCCGTG ATGGGGACGC TGAAACTCGG GCCCCGCGAA
TTTGCCGTAT CGGGCCGGAT CGACCGCCTG GCCGTCTCCG GCGACACTGT GACGATCGCC
GACTACAAGA CCAATCGCGA GATTCCCGCC TCGGCCGAAG ACATAGCGCC GGTCTACAGG
AACCAGCTTG CGATCTATCG CGAACTCTTG AAACCACTTT ATCCCGGCAA GCGTTTCCGA
TGCGTGCTGA TCTTCACGGA AGGTCCGGCG ATCCGGGTTC TTTCCGAGGC GATGCTGGAC
AGGAGTCTTG AAGCGCTCGC GACAAAGTGA
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| Protein sequence | MRSDATGPEE RTPEGWLDWT TERQALASDP ARSAWVSANA GSGKTHVLTQ RVIRLLLAGC
RPSAILCLTY TKAAASEMSN RVFEKLAEWA TLDDAALEKR IEAIEGKRPA TGKIQEARRL
FARALETPGG LKIQTIHAFC EALLHQFPLE ANVAGHFSVL DDRAAAVLLA DARRALLTAT
AAANDRELAA AFATVLELAD DTGLEKLLAA IVANRAQIQA FLDRVSGRGG LDTHLRAALD
LNPGDTPEAI MAAAWPLAGL NGAALVDYIG LASRLGGTKP TAIAEGFRTV RAIGDPAARY
DRLLETFLNG GGKPKADSAF LNAAMRREAP HLESLIEEAR SHLLACVDRL SIVRMYEATR
AALVLAERLN RDYESLKKAR SQLDFEDLIN RTAALLARSD VGAWVHYKLD QGIDHILVDE
AQDTSPAQWT IIQSLAADFF AGDTARADDR TIFAVGDEKQ SIYSFQGARP ERFSRERTLT
ERRVRAGNKR FSPIRLQLSF RSTVDVLSAV DTVFANIGNA RGLSARDEAI VHASNRIGQP
GAVDLWEVIA PEPAASDEDW TAPFDATPER APVNILARRI AAVLEDWIGK ETVIEKGVRR
AMRPGDVIVL VRKRDAFVNA LMRALKRRGN IPVAGADRLV LTSHIAVQDL IALGRFVLLP
EDDLSLAALF KSPLVNLCED DVFELAARRN EGESLWHRLQ QAGVEETSRY NATVRKLAAF
STLSRELSPH DFYARILGAH GGRRAFLARL GSEVSDILDE FLTFALDHER SGLPGLQAFI
STLEIEAPTV KREQDKERDE VRVMTVHAAK GLEAPVVFLV DGGGEAFVRQ QVSDLRFLEK
PQADQTLLTV PVWRAPGSAP NSLIADDNER LKMLAEEEYR RLLYVGMTRA ADRLIVCGYR
GQRQNVDTWH SMVQGTLAQD LMGRATPRLF RAAGEEWQGL AWRETHVPRD LPAADGASGE
PEQAKAGLPR ALFTAPPPPR RLPRPLAPSG TAIAIDEPDG SSIVGSALFT GKNAPKFSML
RGAILHRLLQ VLPSIDAVER TAAAERYLAR SVPRWPEAER LALAATVMDV LGHAELQPLF
GEHSRAEVSV MGTLKLGPRE FAVSGRIDRL AVSGDTVTIA DYKTNREIPA SAEDIAPVYR
NQLAIYRELL KPLYPGKRFR CVLIFTEGPA IRVLSEAMLD RSLEALATK
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