| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_2183 |
|---|
| Symbol | |
|---|
| ID | 5323043 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009636 |
|---|
| Strand | + |
|---|
| Start bp | 2257047 |
|---|
| End bp | 2258636 |
|---|
| Gene Length | 1590 bp |
|---|
| Protein Length | 529 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640791121 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_001327851 |
|---|
| Protein GI | 150397384 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.226598 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGAAT TCACGAAGCG TCCCGATGGC CTCATCGTCC CGGCCGGCAT CAACCGGCGC
GGCTTTCTCG CGGGCACAGC AGCGCTTGGC ATCGCCGCAG GGCTCGGCAG TTCACTCGTA
GGCGGTGAAG CGCGGGCGCA GGAACCGAAG CGAGGCGGCC ATCTGAAGCT CGGCCTCGAC
GGCGGCGCGA CAACCGATTC ACTCGACCCG GCAAGCTACA GCGGTTCCGT ATCCTTCGTA
ATCGGCCATC TCTGGGGCGA CACACTGGTC GAATCCCATC CCGAGACCGG CGCTCCGCTG
CCGTCAATCG CTTCCTCCTG GGAGTCGTCG GCCGACGCTT CGGTCTGGAC GTTCAAGATT
CGAAAGGACA TTGCGTTCCA CGATGGCAGG AAACTCGCCG TTGCAGACGT GATCGCAACC
TTGAAGCGGC ACTCCGACGA AGGCTCCAAA TCGGGCGCGC TGGGACTTAT GCGCTCCGTG
AAGGCAATTG AGGAAAAGGC CGGCGATCTC GTCCTGACGC TGACGGAAGG CAATGCCGAC
CTGCCGCTTC TGCTGACCGA CTATCACCTC ATCATTCAGC CGGACGGCGG CGTCGATAAT
CCGGCTTCGC CGGTCGGCAC CGGACCCTAC AAGCTCGCAA GCTACGAAGC CGGTATACGT
GCGACCTTTG AAAAGAACAC CGCCGACTGG CGCTCGGACC GCGGCTATGT CGACAGCGTC
GAAATCATCG TCATGAATGA CACCACGGCG CGCATTGCGG CGCTTTCCTC CGGGCAGGTG
CACTTCATCA ACGGCGTCGA ACCGAAAACC GTGCCGCTGC TCAAGCGCGC GCCCCGCGTG
GAAATTCTGC AGACTTCGGG CAAGGGCTTC TACAGCTTCC TCATGCATTG CGACACGAGC
CCCTTCGACA ATAACGACCT GAGGCTCGCG CTGAAATATG CGATCGACCG GCAGGCCATT
CTCGACCGTG TGCTCGGCGG CTTTGGCACG CTCGGCAACG ATTATCCGGT CAATGAAAAC
TACGCGCTCG CACCTGAAGG CATCGAGCAG CGTGCCTACG ATCCCGACAA GGCCGCCTTC
CACTACAAGA AGTCCGGCCA TGACCGGCCG ATCCTGCTGC GCACATCCGA CGCCGCCTTC
CCGGGCGCGG TCGACGCCTC CGTCCTCTTC CAGGAAAGCG CCCGCAAGGC CGGCATCGAA
ATCGAGGTAC GTCGCGAACC GGAAGACGGC TACTGGACCA ATGTCTGGAA TGTGCAGCCT
TTCTGCGCAT CCTACTGGGG CGGCCGCCCC ACACAGGACT CCCGCTATTC CACCTCCTAT
CTTTCGAGTG CGGAATGGAA CGACACGCGG TTCAAGCGAG AGGATTTCGA CAAGCTGCTC
CTGCAGGCGC GCTCCGAACT GGACGAAGCC AAGCGCAAGG CGCTCTACCA TACCATGGCT
CTCATGGTGC GCGATGAAGG CGGCCTCATT CTGCCGGTCT TCAACGACTA TGTGAACGCC
GCCTCCGCTT CGCTGAAAGG TTTCGTGCAC GACATCGGCA ACGACCTTTC GAACGGCTAT
GTCGGAAGCC GCGTCTGGTT CGACAGCTAA
|
|---|
| Protein sequence | MTEFTKRPDG LIVPAGINRR GFLAGTAALG IAAGLGSSLV GGEARAQEPK RGGHLKLGLD
GGATTDSLDP ASYSGSVSFV IGHLWGDTLV ESHPETGAPL PSIASSWESS ADASVWTFKI
RKDIAFHDGR KLAVADVIAT LKRHSDEGSK SGALGLMRSV KAIEEKAGDL VLTLTEGNAD
LPLLLTDYHL IIQPDGGVDN PASPVGTGPY KLASYEAGIR ATFEKNTADW RSDRGYVDSV
EIIVMNDTTA RIAALSSGQV HFINGVEPKT VPLLKRAPRV EILQTSGKGF YSFLMHCDTS
PFDNNDLRLA LKYAIDRQAI LDRVLGGFGT LGNDYPVNEN YALAPEGIEQ RAYDPDKAAF
HYKKSGHDRP ILLRTSDAAF PGAVDASVLF QESARKAGIE IEVRREPEDG YWTNVWNVQP
FCASYWGGRP TQDSRYSTSY LSSAEWNDTR FKREDFDKLL LQARSELDEA KRKALYHTMA
LMVRDEGGLI LPVFNDYVNA ASASLKGFVH DIGNDLSNGY VGSRVWFDS
|
|---|
| |