Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_0063 |
Symbol | |
ID | 5320890 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009636 |
Strand | - |
Start bp | 71262 |
End bp | 72470 |
Gene Length | 1209 bp |
Protein Length | 402 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640788994 |
Product | RND family efflux transporter MFP subunit |
Protein accession | YP_001325758 |
Protein GI | 150395291 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACATCGA CAGTAACCCG CCGGGTCCTG TGGGGCGCCG GTTTGAGCAT TCTTTTGTCC GTCGGCGGCG GCGCAGCCGT CTTCTTCGGA CTGCCTCAGC GCTTTCATGC GGACGCCGCG GTCGAGGCGC CCGCTGCCGC GGCTCCAGCC GTTCCGGTCT CCGTCGCCAA GGCCGAGTCG AGACGGATCA CGACCTGGGA GAGCTTCTCC GGCCGTCTTG AAGCGATCGA GCGCGTCGAG GTCCGTCCCC GCGTCGGCGG CGCGATCCTG AGCGCTCACT TCCGCGAAGG GGCCCTGGTC GAAAAGGGAG ATCTGCTGGT CACCATCGAC CCCGAGCCCT TCGCCGCTGC AGTCGAGCGG GCCGAGGCGC AGGTTGCCGC CGCCGAAGCG CGTGTCGCGC TCGCTAAAAC CGAGCTCGAA CGCGGCCGCA AGCTGGTGAC CACGAGCGCG ATCCCGCAGA GCGGCGTCGA CCAGAGGCTT AGCGTTTACG ACGAGGCCCA GGCCAACCTC CGCTCTGCGA AGGCTGCCCT GCGGACCTCC AAACTCGACC TAGCCTACAC CGAAGTGCGC GCGCCGATCA GAGGCCGTGT CGGAGGACTC AATGTGACGG CCGGCAATCT CGTCTCTGCC GGCTCCGCCT CGCCGGTCCT GACGACGCTC GTCTCGGTCG ACCCCATCTA TGCGAGCTTC AACGTCAGCG AGGAAGTCGT CGCGACCGCG CTGGCAGAAC TTTCCGCCTC GGCCGGCAGC ATCGAAGCGA TCGAGCGCAT CCCGGTCGAG ATCGGCACGG CCGCCGACGA GGGGACGCCG ATTACAGGCC ACATTCAGCT CATCAACAAC GAGGTGGACG CGGCAACCGG CACAATTCGG CTGCGGGCGG AACTCGCCAA TGCCGACGGC CGCCTGATCC CGGGTCAATT CGTGCGTATC CGGATCGGAG ATCCGCAGCC GGAGGAAAAG CTGGTGATCA GCGACCGCGC CATCAGTTCG GATCAGGACA AGAAATTCGT CCTGGTCGTC GGGGCTGACA ACAAGGTGGA GTATCGCCAG GTCACCCTCG GACCCGTCGC CGACGGTCTT CGGATCGTGG AGAACGGGCT GAAGCCCGGC GAGAGCATCG TCGTCAACGG CCTGCAGCGC GTACGCCCCG GTGTAGTCGT CGCCCCGCAG CCGGTCGAAC AGGCAACCGC CTCGATCGCC AAACCATAG
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Protein sequence | MTSTVTRRVL WGAGLSILLS VGGGAAVFFG LPQRFHADAA VEAPAAAAPA VPVSVAKAES RRITTWESFS GRLEAIERVE VRPRVGGAIL SAHFREGALV EKGDLLVTID PEPFAAAVER AEAQVAAAEA RVALAKTELE RGRKLVTTSA IPQSGVDQRL SVYDEAQANL RSAKAALRTS KLDLAYTEVR APIRGRVGGL NVTAGNLVSA GSASPVLTTL VSVDPIYASF NVSEEVVATA LAELSASAGS IEAIERIPVE IGTAADEGTP ITGHIQLINN EVDAATGTIR LRAELANADG RLIPGQFVRI RIGDPQPEEK LVISDRAISS DQDKKFVLVV GADNKVEYRQ VTLGPVADGL RIVENGLKPG ESIVVNGLQR VRPGVVVAPQ PVEQATASIA KP
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