| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_6153 |
|---|
| Symbol | |
|---|
| ID | 5320455 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009621 |
|---|
| Strand | - |
|---|
| Start bp | 1078646 |
|---|
| End bp | 1079764 |
|---|
| Gene Length | 1119 bp |
|---|
| Protein Length | 372 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 640777780 |
|---|
| Product | type IV secretion system protein VirB10 |
|---|
| Protein accession | YP_001314712 |
|---|
| Protein GI | 150378117 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2948] Type IV secretory pathway, VirB10 components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGACG CCAATCCACA AACCAGGCAC GACGTAGATG CAGACGGATC CCTGGTCTCT
GAGTCAACTC GCCGGCGTCT TTCAGGACCG CAGAAGTTGA TGATTGCAAG CACTATTGTG
GCATCATCAC TATCCTTAAT CTGGGTTAGC GGAAGTTCAA AGAAAGAAGT GGAACCTACT
CCGCCTCAAA CAACAGTTCT CACCAACACC GAGCCCTTTC GTCCGGCACC AATTGAGGTT
GCTCCCGTTC GTTCAGCTCC CCCGTCAGTT GGTCAGCCGG AGGCTCCCCC GTCAGCACAG
AGCTCCTCGG AACCAAATGA TCCGCGGGCC GAGCAATCGC CAATTTTTGC CTATGAAAGC
GGTGAGCAAG ACACCGGCCA CGCACGCGAG GACAAAGAGG ATGATACCTC GAAACAACTT
CCCTCGAGGC TCGCGGATGA AGCTTCAGTC GATAATGACT TATCGACGCG GATGAAAGCA
GGCGTCCAGG AGCCTAGCCG GGCCACACTC TTGCCGCACC CTGACTTCAC GATCACGCAA
GGAACAATCA TTCCCTGCAT TTTACAAACA GCGATCGATA CAAGCTTGCC TGGCTATGTG
AGGTGCCTTC TACCTCAAGA CGTCCGCGGG GCAACGAACA ACGTTGTGCT TCTAGATCGC
GGGACAACCG TCATTGGCGA AATTCAGCGG GGCCTTCAAC AAGGCGACGC GCGCGTTTTT
GTGATCTGGA ATCGCGCCGA AACGCCGCAT CATGCCGTAG TTTCGCTCGC GTCACCAGGC
GCTGACGAGC TCGGTCGCTC AGGTATGCCG GGCACGGTGG ACAATCACTT CTGGCAACGT
TTCGCAGGGG CAATGCTCTT GAGCGTCGTT CAAGGTGCGT TCCAGGCCGC CAGTCAGCAC
ACAGAAAGCT CCGGCGGGCC TAACCTCAAC AGCTTTCAAA GCAATGGGGC ACAAGCCGCC
GACACGGCGC TTAAAACGAC GATCAACATC CCGCCAACCC TGCAGAAGAA CCAGGGGGAC
GCAGTATCGA TATTCGTGGC TCGAGATCTT GATTTCTCAG GTATATACGA GCTTCGCATG
ACCACTGCGA CAACGAGCGC GCGCCATCGC CGGCCCTAG
|
|---|
| Protein sequence | MNDANPQTRH DVDADGSLVS ESTRRRLSGP QKLMIASTIV ASSLSLIWVS GSSKKEVEPT
PPQTTVLTNT EPFRPAPIEV APVRSAPPSV GQPEAPPSAQ SSSEPNDPRA EQSPIFAYES
GEQDTGHARE DKEDDTSKQL PSRLADEASV DNDLSTRMKA GVQEPSRATL LPHPDFTITQ
GTIIPCILQT AIDTSLPGYV RCLLPQDVRG ATNNVVLLDR GTTVIGEIQR GLQQGDARVF
VIWNRAETPH HAVVSLASPG ADELGRSGMP GTVDNHFWQR FAGAMLLSVV QGAFQAASQH
TESSGGPNLN SFQSNGAQAA DTALKTTINI PPTLQKNQGD AVSIFVARDL DFSGIYELRM
TTATTSARHR RP
|
|---|
| |