Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Smed_5386 |
Symbol | |
ID | 5319688 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sinorhizobium medicae WSM419 |
Kingdom | Bacteria |
Replicon accession | NC_009621 |
Strand | + |
Start bp | 350761 |
End bp | 352053 |
Gene Length | 1293 bp |
Protein Length | 430 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 640777156 |
Product | conjugal transfer protein TrbI |
Protein accession | YP_001314088 |
Protein GI | 150377493 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2948] Type IV secretory pathway, VirB10 components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.0420791 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTCCAGT CGCTTCAGCT CGGCGCGTCC AGTCATGCCG ACGATCAGAA GGCCATGCGC CGCCTCAACC GCCTGCCGAT CTTCGTTGCC ATCACTGTCA TCGTGCTTTT TTTCGCCGTC GTTGTGATTG GCCTGTCGTG GCGCGGGGTC TCCCTCAAGC GTGGCGACGA CACCCAAAGC ATCTCCAATA CTCCGGCGAC TAGCTTCGGC GAGCAACTCA AACGGGGTGT AACGGACGGT ATCATCGGAG AGCCAGTTGA ACGCGAGGCT TTCCAGCCGA CGCCAGTCGT TCACAAGGTC GACACGCAAG AATCCGTTGT TGAAAGAAGG CCTGGGGAAC GAAAGGAGCG ACGACCTAAG CTTGAATCCG AAGAGGAGTG GAAGGCTCGC CTGAAGCGAG AGCAGGATGA GCAGTATATA CGCGAGGCCC ATCGCCAACG AATGGCTCGC CTCCAAGCCC ATGCGACCGC GCTCGATTCT CCGCTGAAGG TGGACGTTTC CGATATCAAG AATTCAACAA ATCACGCCAA CACTCGTCAG TCTAGAAATC TCGAAGCGAA GGGTGCCTCA GACCTACATG CAGCTGCTAT GAAATCGGGC CTGATAAGCC AGCAAGTCGA CCCGAACGGC CAGATATCCA AGGAGGAGTT TTTTAATAAG GAAATCAAGG ATCTTGGCTA CCTGCCGAAC CAGGTTGTAC CGCAGTTGTC ACCTTACGAA TTGAAACGCG GCTCGGTTAT TCCGGCCACA TTGATCACTG GCCTCAATTC CGATTTGCCA GGACGCATTG CTGCTCAGGT CAGCCAGAAC GTCTATGACA GCGCTACCGG CTACAGACTG CTCATTCCGC AGGGAGCCAA ACTCCTGGGG CGCTATGATT CGAAGTTATC CTTCGGCCAA GAGCGGGTTC TGGTCGTCTG GACCGATTTG ATCTTTCCCA ACGGTTCAAC GCTGCAGATT GGCGGCATGG CCGGCACAGA CGCCGAAGGA TATGGCGGCT TCAAGGATAA GGTCGACCGT CATCTGTGGC GGACCTTCGG TTCCGCGGCT CTAGTCGCAA TAATCGGAAC CGGTATCGAT ATGTCGTTGC CAGAGAGTTC AACGCTTGCA ACGCAGGACA CCGCCTCAGA CGCTGCAAGG CGTAATTTCG CGGAAAGCTT TGGTCGGGTG GCGGAACAGA CGATCTCAAA GAACCTCAAT GTGCAGCCGA CGATCCGTAT CCGTCCTGGC TACAAGTTCA ATATTCTCGT TGATCAAGAT ATTGTTTTTC CGTCGGTTTA TAATGGCCAT TGA
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Protein sequence | MVQSLQLGAS SHADDQKAMR RLNRLPIFVA ITVIVLFFAV VVIGLSWRGV SLKRGDDTQS ISNTPATSFG EQLKRGVTDG IIGEPVEREA FQPTPVVHKV DTQESVVERR PGERKERRPK LESEEEWKAR LKREQDEQYI REAHRQRMAR LQAHATALDS PLKVDVSDIK NSTNHANTRQ SRNLEAKGAS DLHAAAMKSG LISQQVDPNG QISKEEFFNK EIKDLGYLPN QVVPQLSPYE LKRGSVIPAT LITGLNSDLP GRIAAQVSQN VYDSATGYRL LIPQGAKLLG RYDSKLSFGQ ERVLVVWTDL IFPNGSTLQI GGMAGTDAEG YGGFKDKVDR HLWRTFGSAA LVAIIGTGID MSLPESSTLA TQDTASDAAR RNFAESFGRV AEQTISKNLN VQPTIRIRPG YKFNILVDQD IVFPSVYNGH
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