Gene Smed_5030 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_5030 
Symbol 
ID5318778 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009620 
Strand
Start bp1551919 
End bp1552398 
Gene Length480 bp 
Protein Length159 aa 
Translation table11 
GC content62% 
IMG OID640776812 
Productblue (type1) copper domain-containing protein 
Protein accessionYP_001313744 
Protein GI150377148 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG4454] Uncharacterized copper-binding protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.4583 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value0.77741 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAGCTC ATATCTTCGG ACTTCTCGTC GCGGCGCTCG CCACCCCGGC GCTCGCTTCC 
GGCAGTCACG AGGGCGGTCA TGGCGAAGCC ATGGCTGTCG GCGAGCCCGG CAAGAAAGCA
AGCGCCACCC GGACAATTGA GGTCACGATG AAGGAGACGG ACGACGGCCG GATGATCTTC
ACGCCATCGA CCTTCAAGGT CAGCAAGGGC CAGACCATCC GCTTCGCGAT CAAGAACGCC
GGCGGGCTCG ATCACGAGTT CGTGCTCGAC CAGGAGGACA AGATCATGGA GCACAAGGCG
GTGATGGAGA AGTTCCCGGA GATGGAGCAC GACGATCCGA ACGCCATCCG TCTCGCCGCC
GGAGAGTCCG GCGAGATCAT CTGGAAGTTC ACGAACGACG GCACGTTCAA GATCGCTTGC
CTGGTGCCGG GTCACTACGA CGTGGGCATG CACGGCGACG TCACCGTTGC CAAGAAGTGA
 
Protein sequence
MKAHIFGLLV AALATPALAS GSHEGGHGEA MAVGEPGKKA SATRTIEVTM KETDDGRMIF 
TPSTFKVSKG QTIRFAIKNA GGLDHEFVLD QEDKIMEHKA VMEKFPEMEH DDPNAIRLAA
GESGEIIWKF TNDGTFKIAC LVPGHYDVGM HGDVTVAKK