| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smed_4732 |
|---|
| Symbol | |
|---|
| ID | 5319078 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sinorhizobium medicae WSM419 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009620 |
|---|
| Strand | + |
|---|
| Start bp | 1252737 |
|---|
| End bp | 1253618 |
|---|
| Gene Length | 882 bp |
|---|
| Protein Length | 293 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640776530 |
|---|
| Product | helix-turn-helix domain-containing protein |
|---|
| Protein accession | YP_001313462 |
|---|
| Protein GI | 150376866 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.0052536 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTCTTTCA GACCACTTCT CGGTAATGGT CGGATCCGGA CTGCGGGTGA GCGGCTGGCG
AAGCCGTTGA CAGCTTCGTG GGCCAATTCA TCGATCATTT TCGATCGCCG CCGCTGGGCA
TGCCGGGAAG CGGAAATGCG CTGGACCGCT CCGCATCACC TGTTCGTTCT GACTGAGCGA
GGCGGCACAT CCCAGACGCT CATCCGTTCC GACGGGAGCC TGTATCAGGG GCGGGACGGA
CCGGGTGCCC TGACATTCGT GCCCGCGGGC ACGGAACGGC TCGGCGCGTA TCGCGACGTC
GATCTCACCT ATTCGGCGCT CTGGATCGAT CCCCGGTCCA TCCCTCCGGG CAGCGATCAC
CTGAAGAACC TGCCGGTCCT GATAAACAAG AGTGACTTTG TCACGGAAGC GCTGCTGAAA
TCGCTGAGTT GCGAGATATC CCGCGGCCAC GCTCCCGATA CGGCCTATAT GGAGCATCTG
GTTGCACTTA TCGCTTTGCG GATACGTTCT GTCTTTGATG AACCCGTAAA GGTTATCCGC
CACGGATCCC TTGGCGGCGC CGTCGTGAAG CGGGTTCGCG ACTATATCGA CGCCCATCTG
GACGGAGACA TTTCGCTTGG CGAGTTGGCG CATGTCGCCG GTGTTGCGGC GGATTCCTTT
GCGCGTCGCT TCAAGGCCAC CACAGGCCTT GCACCGTACG CCTATGTCAT CGAGGAACGC
GTCCGGCGGG CGGAGTCCCT CCTGCATGAA ACCGACATCG CGCTCAGCGA GATCGCATTG
AATTGCGGCT TTTCGAGCCA GAGTCACTTC ACCGCCACAT TCAAGCGCCT GCGAGGGATA
ACGCCGCGCG CTTATCGATC GGACGTTATT CCGGAATTCT GA
|
|---|
| Protein sequence | MSFRPLLGNG RIRTAGERLA KPLTASWANS SIIFDRRRWA CREAEMRWTA PHHLFVLTER
GGTSQTLIRS DGSLYQGRDG PGALTFVPAG TERLGAYRDV DLTYSALWID PRSIPPGSDH
LKNLPVLINK SDFVTEALLK SLSCEISRGH APDTAYMEHL VALIALRIRS VFDEPVKVIR
HGSLGGAVVK RVRDYIDAHL DGDISLGELA HVAGVAADSF ARRFKATTGL APYAYVIEER
VRRAESLLHE TDIALSEIAL NCGFSSQSHF TATFKRLRGI TPRAYRSDVI PEF
|
|---|
| |