Gene Smed_4307 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_4307 
Symbol 
ID5319311 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009620 
Strand
Start bp803330 
End bp804151 
Gene Length822 bp 
Protein Length273 aa 
Translation table11 
GC content64% 
IMG OID640776112 
Producttranscriptional regulator IclR 
Protein accessionYP_001313045 
Protein GI150376449 
COG category[K] Transcription 
COG ID[COG1414] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.0456166 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATGCGA GCGGCAAGGG TAAGCGGGGG CGCAAGGCGG GAGAGAATGC GACGCCGGCC 
TCCGTTCAGG TGCTGGACAG GAGCCTGTCC CTGCTGGCGA TCATTGCCGA AGGCGACGGC
TCGACATTGA CCACGCTTTC GGAGCGGTCC GGCATGGCGC CTTCGACCGT GCATAGGCTG
CTTACCTCGC TCGCCCAGCA CGGAATGGTG ACGAACGATA CCGAAACCGG GACATGGACG
GTCGGCGTCA AGGCATTCGA GATCGGCAAC GCCTTCCTGC GCTTTCGCAA ACTCGGCACG
ATCAGCCGCC CGTTTCTGAA GCGCCTCATG GACGAAAGCG GCGAGACGGC AAATATCGGC
ATAGAGGACG ACGGCGACGT CGTTTTCATC TCCCAGGTCG AAAGTCATGC GCCGATGCGC
GCCTTCTTCC GTCCGGGACG GCGGGGACCG ATCCACGCTT CTGGCATCGG CAAGGCGATT
CTTTCCACCT GGTCCGATAC GGAGATCGCC AAGACTTTGA ACGGCAGGCC ACTGCCATGC
TTCACCGGAC GGACGCTTGC CACGCTGCCG GACCTGATCA GGAATGTTCA GGAGATCCGT
TTTCGCGGCT GGTCGATCGA TGACGAAGAA CATACGCTCG GCATGCGCTG CATCGCCGCC
CCCCTCTTCA ACGAATATGG CGAGGCGATC GGCGGCATCT CGATCTCCGG TCCCAGCGTC
CGCGTCGACG ACGAGAGGCT ACGGGTCCTC GGCCCCGCCG TCCGTCGCAC GGCCGACGAA
CTGACACGCG CGATCGGCGG GCACCGGCCG GAAGAGGGCT GA
 
Protein sequence
MDASGKGKRG RKAGENATPA SVQVLDRSLS LLAIIAEGDG STLTTLSERS GMAPSTVHRL 
LTSLAQHGMV TNDTETGTWT VGVKAFEIGN AFLRFRKLGT ISRPFLKRLM DESGETANIG
IEDDGDVVFI SQVESHAPMR AFFRPGRRGP IHASGIGKAI LSTWSDTEIA KTLNGRPLPC
FTGRTLATLP DLIRNVQEIR FRGWSIDDEE HTLGMRCIAA PLFNEYGEAI GGISISGPSV
RVDDERLRVL GPAVRRTADE LTRAIGGHRP EEG