| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tmel_0564 |
|---|
| Symbol | |
|---|
| ID | 5296571 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thermosipho melanesiensis BI429 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009616 |
|---|
| Strand | - |
|---|
| Start bp | 598091 |
|---|
| End bp | 599914 |
|---|
| Gene Length | 1824 bp |
|---|
| Protein Length | 607 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 640768826 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_001305816 |
|---|
| Protein GI | 150020462 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.000010438 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACGTT TGTTAGTTTT TCTAACTATT TTATTGAGTA TATTTATATT TGCTGAAACA
GTTGTGAACT ATGCTTTACT AGAGGATATT ACGACAACAA ATATTTGGAA TCTGTTAGGT
TCTGGTTCAT CGGCGTGGAA TTTCTATGTG CAGCTTTGGA AATATCCATC ATTGCTTTCC
ATGAACAAAG ATGGAATGTT GATACCATCT GCAGCGTTAG AAGTTCCAAC AATAGTAGAA
GAAGATGGAA TGTATACAGT AACGGTTAAA TTGAGAAAAG ATTTAAGATG GAGTGATGGT
TCACCATTTA CAGCAGATGA TGTTGTGTTT ACCTATAATA CCATTCAAGA ATTGCAAATA
CCAGGTGGTA ACTGGACGGG TGCATATGAA CCCAAAAAGG TTGAAAAAAT TGATCCATGG
ACTGTAAAAT TCTACTTTGA AGAAAAAAAG ACAATGACAA TATATTACGA TACACTTATG
ACAGCATTGG TATGTAAAAA TTTCTGGGAA CCATATGTAG AAAAAGCTAA ACAACAAGAG
AATCCTGTTA ATTGGTTACT AAGTCAAGAA GTTGTAGATC CTGGTATTAC TGCATTAAAC
CTTGGGAAGA TAGAAAAAGG TGCATTTGTT GAAGTGAAAA AAGAAGTTGA TGATAACTTT
TATTGGGCAA AAGGTGAAAA ATCTATTTAC TATGAAAATG GTGGATTTGT AGTTGAAAAT
CCAAACAGTG GTTACAAATG GACAAGTAAC AATCCAGAGC CAAATGGATA TGTAAAGTTA
GAAGTTGTTA ATGGACCATA TGTTGATAAA ATTATATATA GAATTTATGG GAACAAGTCT
GTTGCGCTAC AAGCACTTCA AAAAGGCGAT GTTGATTTCG TACTGAATCC AAATGGTTTA
ACATCTGGAG AATTTGAATC TCTTAAGGGT GTACCTGGCA TAAAATTAAC AGTTAATCCT
TCACTTGGAT TTAGATATCT TGCATTTAAC ATGAGAAAAT ATCCTTTCAA TATAAAGGAA
TTTAGGCAAG CAATAGCAGC ATTAATAGAC AGGGACTATA TTTGTAATAG GGTACTTCAA
GGAAAGGCAA TTCCTCTTGC AACACCTGTA CCACCAGCAA ATACGTTCTG GTTTAATACG
GATGTAAAGA CCATAGGTGA AGGACTTTCA AGAGCGGAAA GATATCAATT GGCCGTAGAT
CTTCTTAAGA AGGCGGGCTT TAGCTGGGAT CAAGAGCCAG TTATAAATCC AGATAATCCT
GCAAATCCAG TTTCCAAACG CGGTAAAGGA CTTAAAGGTC CAGATGGAAA CTACGTACCA
GATCTTGAAC TTCTTTCACC ATCAGGTGAA TACGACCCAA TGAGAGCAAC AACAGCAATA
TATATTGAGC AATGGGCAAA AGATCTTGGT ATTCCAATTG ATGTAAAACT TACAGATTTC
AATGAAATAG TTACAAGGGC ATTTGATGAG GTTGATTTTG ATATGTACAT GCTTGGTTGG
GGTATAGGAA GAGTACCAAC ATACTTTAAG AGCTTCTGGG CATCAGACCA AATGGCACCA
GAAGGATTTA ACACTCCAGG TTACAATAAT CCTGAATTTG ATGCATTAGT AGAAGAATTT
GAAATGGCAG ATAACTTTGA TGAAGCAGTT GAAGCGATAA AAGAAGCACA AGAACTTCTT
GCAGAAGATC TTCCATATAT CATTCTCTTT ACAACACCAA TTTACGAGGC TTACAGAGAT
ACAATCCAAT TCCCGTACAC AGACACACTC GATGGTATTC AAAACTATAA CGGATTCCCG
GAAAATGTAA TGAAAGTAAA ATAA
|
|---|
| Protein sequence | MKRLLVFLTI LLSIFIFAET VVNYALLEDI TTTNIWNLLG SGSSAWNFYV QLWKYPSLLS
MNKDGMLIPS AALEVPTIVE EDGMYTVTVK LRKDLRWSDG SPFTADDVVF TYNTIQELQI
PGGNWTGAYE PKKVEKIDPW TVKFYFEEKK TMTIYYDTLM TALVCKNFWE PYVEKAKQQE
NPVNWLLSQE VVDPGITALN LGKIEKGAFV EVKKEVDDNF YWAKGEKSIY YENGGFVVEN
PNSGYKWTSN NPEPNGYVKL EVVNGPYVDK IIYRIYGNKS VALQALQKGD VDFVLNPNGL
TSGEFESLKG VPGIKLTVNP SLGFRYLAFN MRKYPFNIKE FRQAIAALID RDYICNRVLQ
GKAIPLATPV PPANTFWFNT DVKTIGEGLS RAERYQLAVD LLKKAGFSWD QEPVINPDNP
ANPVSKRGKG LKGPDGNYVP DLELLSPSGE YDPMRATTAI YIEQWAKDLG IPIDVKLTDF
NEIVTRAFDE VDFDMYMLGW GIGRVPTYFK SFWASDQMAP EGFNTPGYNN PEFDALVEEF
EMADNFDEAV EAIKEAQELL AEDLPYIILF TTPIYEAYRD TIQFPYTDTL DGIQNYNGFP
ENVMKVK
|
|---|
| |