Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tmel_0490 |
Symbol | |
ID | 5298061 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thermosipho melanesiensis BI429 |
Kingdom | Bacteria |
Replicon accession | NC_009616 |
Strand | - |
Start bp | 515973 |
End bp | 517934 |
Gene Length | 1962 bp |
Protein Length | 653 aa |
Translation table | 11 |
GC content | 34% |
IMG OID | 640768751 |
Product | hydrogenase large subunit |
Protein accession | YP_001305742 |
Protein GI | 150020388 |
COG category | [C] Energy production and conversion [R] General function prediction only |
COG ID | [COG1905] NADH:ubiquinone oxidoreductase 24 kD subunit [COG4624] Iron only hydrogenase large subunit, C-terminal domain |
TIGRFAM ID | [TIGR02512] hydrogenases, Fe-only |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAATAA TAGTAAATGG AAAAGAAACC ATTATTAATG ATAATGCAAA AAATCTTTTA GAAGCTTTAA AAGAAGTGGG AATTGAAATA CCAAATCTCT GTTATTTATC AGAAACATCC ATATATGGTG CATGTAGAAT GTGTTTAGTT GAAGTTGATA ATCAGATTAC AACTTCTTGT TCCATAAAGC CATATGAAGG AATGAACGTA AAAACACATA CACCTGAGAT ATATGAAATG AGAAGGGGAA TATTAGAACT TTTACTTGCA TCACACAATA GAGATTGTAC AACTTGTGAA AGAAATGGAA ATTGTAAATT ACAAAAATAC GCAGAAGAAT TTGGTATTAG AAAGGTAAGG TTTGATAAGA TTGACAAACC AAACATCATA GATTACTCTT CCATAATTAT TAGGGATAAT TCAAAGTGTA TTCTTTGTGG TGATTGTGTG AGAGTTTGTG ATGAGATTCA ATCAATAGGT GCTATTGATT TTGCATTTAG AGGTTTTGAA GCACAAGTTA TGCCTGCTTT CGGTGAAGAA CTTGCAAATA CAGCGTGTGT GCTTTGTGGC CAATGTGTAG CTCACTGTCC AACTGGAGCA TTGACTTTTA GGAATGATAT ACAAAAGGTA TACAAAGCAA TGGAGGAAGA AAAATTTGTA ATTGGAATGA TTGCACCGGC AGTTAGAGCT TCTATCCAGG AGGAACTTGG ATTAGATGGA GATGTTGTTA CCGCAGGGCG AATTGTTAAC TTTTTAAAAA TGATAGGTTT TAAGAAAGTG TTTGATGTTT CGTTTGCGGC GGATTTGGTT GCATACGAAG AAGCGCACGA ATTTAAAGAA AGGCTTGAAA GAGGAGAAAA ATTACCACAA TTTACTTCAT GCTGTCCAGG TTGGGTAAAA TTTGCAGAGC ATAATTATCC TGAACTTTTG GATAATCTAT CGTCTGTGAA ATCTCCACAA CAAGCACTAG GAAGTGTAAT AAAGAGGATA TATGCAAAAG AAATGGGAAT AGATCCGAAA GATATATTCC TGGTATCCAT AATGCCATGT ACAGCTAAAA AGTTTGAAGC AGAAAGAGAA GAATTTGCTG GAGAAGTTGA TGTGGTTATT ACTACAAAAG AGTTATCACA AATAATTAGG TCAAGTGGTT TTGATCTAAA AAGTATTCCC CCGATTCCAT TTGACAGACC ATATGGTCTT TCATCACAAG CTGGTCTAAG CTTTGGAAAG ACTGGAGGAG TATTTTCGAG TGTTCTAAAA GTTCTAAATG ATGAAATAGG GTTAGAGAAT GTAGAAACAA AAGAAGTAGA AAAAGGAATA AGGATAACAA ATGCAACAAC TAAAGATGGA AAAACAATTA ACGGAGTAGT GGTATTTGGT CTTGGAAATG TAAGAAAAGT AATGGAGAAA TTAAACGACT GGAATGTAGA TATAGTAGAA GTTATGGCTT GTGATTATGG ATGTATTGGT GGAGGTGGCC AACCGTATCC AAATGATACA GAAATAAGGA TAAAACGTGC AAAAATACTT AATGAAGTAG TTGGTATAGA TGTACTAATT TCACCTACGG AGAATTATCA CATGCTATCT TTATATGAAA ATCACCTTAA AGCTCCTTTG AGTCACGAAT CTCATAAGCT TTTACATACA ACTTACAAAA ATAGGAAAAG AATAAAAAAT GGGGATATAG AAATAATTCC TCTACCAGTT GATGAGGATA AAAAAACAGT AGTAAAGGTA TGTCTTGGAA CATCTTGCTA TGCAAAAGGG TCATACGAGC TTCTTTCACA GCTTATTAAA CTTACTAATG AAGAAGAACT TTCAAATGTT GAGATAAAAG GAACATTTTG TTTGGAAAAG TGTGGAAATG CACCAAACGT TATGGTAAAT GATAAAATAA TAGATGAAGC AAGCATTGAA AAAATAAAAG AGGTGTTAAA GGAGGATGCC AAAAAACGAT AA
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Protein sequence | MKIIVNGKET IINDNAKNLL EALKEVGIEI PNLCYLSETS IYGACRMCLV EVDNQITTSC SIKPYEGMNV KTHTPEIYEM RRGILELLLA SHNRDCTTCE RNGNCKLQKY AEEFGIRKVR FDKIDKPNII DYSSIIIRDN SKCILCGDCV RVCDEIQSIG AIDFAFRGFE AQVMPAFGEE LANTACVLCG QCVAHCPTGA LTFRNDIQKV YKAMEEEKFV IGMIAPAVRA SIQEELGLDG DVVTAGRIVN FLKMIGFKKV FDVSFAADLV AYEEAHEFKE RLERGEKLPQ FTSCCPGWVK FAEHNYPELL DNLSSVKSPQ QALGSVIKRI YAKEMGIDPK DIFLVSIMPC TAKKFEAERE EFAGEVDVVI TTKELSQIIR SSGFDLKSIP PIPFDRPYGL SSQAGLSFGK TGGVFSSVLK VLNDEIGLEN VETKEVEKGI RITNATTKDG KTINGVVVFG LGNVRKVMEK LNDWNVDIVE VMACDYGCIG GGGQPYPNDT EIRIKRAKIL NEVVGIDVLI SPTENYHMLS LYENHLKAPL SHESHKLLHT TYKNRKRIKN GDIEIIPLPV DEDKKTVVKV CLGTSCYAKG SYELLSQLIK LTNEEELSNV EIKGTFCLEK CGNAPNVMVN DKIIDEASIE KIKEVLKEDA KKR
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