| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TBFG_12948 |
|---|
| Symbol | |
|---|
| ID | 5223634 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Mycobacterium tuberculosis F11 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009565 |
|---|
| Strand | + |
|---|
| Start bp | 3273721 |
|---|
| End bp | 3279204 |
|---|
| Gene Length | 5484 bp |
|---|
| Protein Length | 1827 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640607714 |
|---|
| Product | phenolpthiocerol synthesis type-I polyketide synthase ppsD |
|---|
| Protein accession | YP_001288877 |
|---|
| Protein GI | 148824123 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
[COG3321] Polyketide synthase modules and related proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 40 |
|---|
| Plasmid unclonability p-value | 0.413378 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 207 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAAGTC TGGCGGAGCG CGCGGCGCAA CTGTCGCCGA ACGCGCGAGC GGCCCTGGCG
CGCGAGCTCG TCCGTGCGGG TACGACCTTC CCGACCGACA TCTGCGAGCC GGTGGCGGTG
GTGGGCATCG GCTGTCGCTT TCCGGGGAAT GTGACTGGGC CAGAGAGCTT TTGGCAGCTA
CTGGCCGACG GTGTGGACAC AATCGAGCAG GTGCCGCCTG ATCGGTGGGA TGCGGACGCG
TTCTACGATC CCGATCCTTC GGCGTCGGGT CGGATGACGA CGAAATGGGG TGGTTTCGTT
TCCGATGTCG ACGCGTTCGA CGCCGACTTT TTCGGAATCA CTCCTCGGGA AGCCGTGGCG
ATGGACCCGC AGCATCGGAT GCTGCTCGAG GTTGCCTGGG AAGCGTTGGA GCACGCGGGT
ATTCCGCCGG ATTCCTTGAG CGGCACTCGA ACCGGCGTGA TGATGGGTCT GTCGTCGTGG
GACTACACGA TCGTCAATAT CGAGCGCAGA GCCGACATCG ACGCGTACCT GAGCACCGGA
ACCCCGCACT GTGCCGCGGT GGGGCGGATC GCGTATCTGT TGGGATTGCG TGGTCCGGCC
GTCGCCGTAG ATACCGCTTG TTCGTCGTCG CTGGTGGCAA TTCACTTGGC GTGTCAGAGC
CTTCGCCTGC GTGAAACCGA CGTGGCATTG GCGGGCGGGG TGCAGCTCAC CTTGTCACCG
TTCACCGCCA TCGCGCTGTC CAAGTGGTCG GCGCTGTCAC CGACCGGCCG ATGCAACAGC
TTCGACGCCA ACGCGGATGG ATTCGTGCGC GGCGAGGGCT GCGGCGTGGT GGTGCTCAAG
CGGTTGGCCG ACGCGGTGCG CGACCAGGAC CGGGTGCTTG CGGTGGTCCG CGGTTCGGCA
ACTAACTCCG ATGGTCGGTC CAACGGCATG ACCGCACCGA ACGCGCTGGC GCAGCGTGAC
GTGATCACAT CCGCCCTCAA GCTTGCGGAT GTTACCCCTG ACAGCGTGAA CTATGTCGAA
ACACACGGCA CCGGAACGGT GTTGGGGGAC CCCATCGAGT TCGAGTCGCT GGCGGCCACT
TATGGCCTGG GTAAAGGCCA GGGCGAGAGC CCGTGCGCAT TGGGGTCGGT CAAGACCAAC
ATCGGCCACC TGGAGGCGGC CGCCGGTGTG GCTGGATTCA TCAAGGCGGT GCTGGCGGTG
CAACGTGGGC ACATTCCCCG CAACTTGCAC TTCACCCGGT GGAACCCGGC CATCGACGCG
TCGGCGACGC GGCTGTTCGT GCCGACCGAA AGCGCCCCGT GGCCGGCGGC TGCCGGTCCA
CGCAGGGCTG CGGTGTCATC GTTCGGCCTC AGCGGGACCA ACGCGCACGT GGTGGTCGAG
CAGGCACCCG ACACCGCAGT AGCCGCAGCC GGCGGCATGC CGTATGTTTC GGCGCTGAAC
GTCTCCGGCA AGACGGCCGC GCGGGTGGCG TCGGCGGCGG CGGTGCTGGC CGACTGGATG
TCGGGGCCGG GCGCGGCGGC ACCACTGGCC GACGTGGCAC ACACGTTGAA CCGGCACCGG
GCCCGGCACG CCAAGTTCGC CACCGTCATC GCGCGTGACC GCGCCGAGGC GATCGCGGGG
TTGCGAGCGC TGGCGGCCGG ACAACCACGC GTTGGGGTGG TGGATTGCGA CCAGCATGCC
GGTGGGCCTG GCCGGGTTTT TGTGTATTCG GGTCAGGGCT CGCAGTGGGC GTCGATGGGC
CAGCAGTTGC TGGCCAACGA ACCGGCGTTC GCCAAGGCGG TAGCCGAGCT GGATCCGATA
TTCGTTGACC AGGTTGGCTT TTCGCTGCAG CAAACGCTTA TCGACGGCGA CGAGGTGGTG
GGCATCGACC GCATCCAGCC GGTGCTGGTC GGGATGCAGT TGGCGCTGAC CGAGTTATGG
CGGTCCTATG GGGTGATTCC AGATGCCGTG ATCGGGCACT CGATGGGTGA GGTGTCGGCG
GCAGTGGTGG CCGGCGCGTT GACGCCCGAG CAGGGCTTGC GGGTCATCAC CACCCGGTCG
CGGTTGATGG CGCGGCTGTC GGGGCAGGGA GCGATGGCGC TGCTCGAGCT GGATGCCGAC
GCCGCCGAGG CGCTGATTGC CGGCTATCCG CAGGTGACGC TGGCGGTGCA TGCGTCACCG
CGCCAGACGG TGATCGCCGG GCCGCCCGAG CAGGTGGACA CGGTGATCGC GGCGGTAGCG
ACGCAAAACC GGTTGGCGCG CCGCGTCGAA GTCGACGTGG CCTCCCATCA CCCGATCATC
GATCCCATAC TGCCCGAGTT GCGAAGCGCG TTAGCGGATT TGACTCCGCA GCCGCCGAGC
ATCCCGATCA TTTCCACTAC GTACGAAAGC GCGCAGCCGG TGGCGGATGC CGACTATTGG
TCGGCCAACC TGCGCAACCC GGTGCGATTC CACCAGGCCG TCACCGCCGC CGGTGTCGAC
CACAACACCT TCATCGAAAT CAGCCCTCAC CCCGTGCTCA CGCACGCACT CACCGACACC
CTGGATCCGG ACGGCAGCCA TACAGTCATG TCGACGATGA ACCGCGAACT GGACCAGACG
CTGTATTTCC ACGCCCAACT CGCCGCGGTC GGTGTGGCTG CGTCCGAGCA CACCACCGGT
CGCCTTGTCG ACCTGCCCCC CACACCGTGG CACCATCAGC GATTCTGGGT CACGGATCGT
TCGGCGATGT CCGAGCTGGC CGCGACCCAC CCGCTCCTGG GCGCGCACAT CGAGATGCCG
CGCAACGGAG ACCATGTCTG GCAGACCGAT GTCGGCACCG AGGTCTGTCC CTGGTTGGCA
GACCACAAGG TGTTCGGTCA ACCCATCATG CCGGCCGCGG GGTTCGCCGA GATCGCCTTG
GCGGCGGCCA GCGAAGCCCT CGGCACAGCC GCCGACGCCG TCGCACCCAA CATCGTGATC
AACCAGTTCG AGGTGGAGCA GATGCTGCCC CTCGACGGCC ACACGCCGCT AACGACGCAG
TTAATTCGCG GCGGGGACAG CCAGATTCGG GTCGAGATCT ATTCCCGCAC GCGTGGCGGA
GAGTTCTGCC GACACGCCAC GGCCAAGGTT GAACAATCGC CGCGCGAATG TGCGCACGCG
CACCCGGAAG CCCAAGGTCC CGCCACCGGG ACAACAGTGT CGCCGGCCGA TTTTTATGCC
CTGCTCCGCC AAACCGGCCA ACACCATGGT CCGGCGTTCG CGGCCTTAAG CCGGATCGTG
CGCCTGGCCG ATGGTTCCGC GGAAACCGAG ATCAGCATTC CCGACGAGGC GCCGCGCCAT
CCCGGGTATC GGCTGCACCC CGTGGTATTG GATGCGGCAT TGCAAAGCGT GGGTGCCGCG
ATACCCGACG GCGAGATCGC GGGGTCGGCG GAAGCCAGCT ATCTGCCAGT GTCGTTCGAG
ACCATCCGGG TGTACCGCGA CATCGGTCGG CACGTCAGGT GTCGTGCCCA CCTGACAAAC
CTCGACGGCG GCACCGGAAA GATGGGCAGG ATCGTCCTAA TCAACGACGC CGGCCACATA
GCGGCCGAAG TGGACGGCAT CTATCTGCGT CGTGTCGAAC GCCGTGCGGT ACCCCTGCCA
CTAGAGCAGA AGATCTTCGA TGCCGAATGG ACCGAAAGCC CGATCGCAGC CGTGCCGGCT
CCGGAGCCAG CTGCCGAGAC GACGCGGGGA AGTTGGCTGG TACTCGCCGA TGCAACGGTG
GATGCGCCAG GCAAGGCCCA GGCCAAGTCG ATGGCCGACG ACTTCGTGCA GCAGTGGCGC
TCACCGATGC GGCGGGTGCA CACCGCCGAT ATCCACGACG AATCGGCGGT GCTGGCCGCA
TTTGCAGAAA CGGCAGGCGA TCCCGAGCAC CCGCCGGTTG GCGTGGTGGT GTTCGTCGGC
GGTGCCTCGA GTCGACTGGA CGACGAGCTG GCGGCGGCGC GCGACACGGT GTGGTCGATC
ACCACGGTGG TTCGTGCGGT CGTCGGCACG TGGCACGGCC GATCACCGCG GCTATGGCTG
GTCACCGGGG GCGGACTTTC CGTTGCCGAC GACGAGCCGG GAACACCCGC GGCGGCTTCC
TTGAAAGGGC TGGTGCGGGT GCTCGCCTTC GAGCACCCGG ACATGCGCAC CACCCTGGTC
GATCTGGACA TCACACAAGA CCCGCTGACC GCGCTGAGCG CGGAACTGCG GAATGCCGGG
AGTGGGTCGC GCCATGATGA CGTGATCGCG TGGCGCGGCG AGCGCAGGTT CGTCGAACGG
CTGTCGCGCG CCACGATCGA TGTATCCAAA GGGCATCCGG TGGTGCGCCA GGGAGCGTCG
TACGTCGTCA CCGGCGGCCT CGGCGGTCTC GGCCTGGTCG TCGCTCGTTG GCTGGTGGAC
CGCGGCGCCG GCCGGGTGGT GCTGGGTGGC CGCAGCGATC CCACTGACGA GCAGTGCAAC
GTCCTGGCCG AACTGCAGAC CCGCGCCGAG ATCGTGGTTG TCCGTGGCGA CGTGGCATCG
CCGGGGGTGG CAGAAAAGCT GATTGAGACG GCCCGACAGT CTGGGGGCCA ATTGCGCGGC
GTCGTGCACG CCGCCGCGGT CATCGAAGAC AGCCTGGTGT TCTCTATGAG CAGGGACAAC
CTAGAACGGG TGTGGGCACC CAAGGCCACC GGTGCGCTGC GCATGCACGA AGCCACCGCT
GACTGCGAGC TCGACTGGTG GCTCGGATTC TCTTCCGCCG CTTCGCTATT GGGTTCTCCC
GGGCAAGCGG CCTACGCGTG CGCCAGCGCG TGGCTGGACG CGCTGGTCGG ATGGCGCAGG
GCATCCGGCC TGCCGGCCGC GGTGATCAAC TGGGGTCCGT GGTCGGAGGT AGGCGTCGCC
CAGGCCTTGG TGGGCAGTGT TCTCGACACG ATCAGTGTCG CAGAAGGCAT CGAGGCTCTC
GACTCATTGC TTGCCGCCGA CCGGATCCGC ACTGGAGTGG CTCGGCTGCG TGCCGATCGG
GCCCTGGTCG CATTCCCGGA GATCCGCAGC ATCAGCTACT TCACCCAGGT GGTCGAGGAG
CTGGACTCGG CGGGTGACCT CGGCGACTGG GGCGGGCCCG ACGCGCTTGC CGACCTCGAC
CCGGGCGAGG CGCGGCGCGC GGTGACCGAG CGGATGTGTG CGCGCATCGC TGCGGTGATG
GGCTACACTG ACCAGTCGAC TGTCGAACCC GCCGTGCCCT TGGACAAGCC CCTGACCGAG
CTGGGGCTGG ATTCTCTGAT GGCGGTACGA ATACGCAACG GCGCGCGGGC GGATTTCGGC
GTGGAACCGC CGGTAGCGCT GATACTGCAA GGCGCGTCCT TGCATGACCT GACGGCGGAC
TTAATGCGCC AACTCGGGCT CAATGATCCC GATCCGGCGC TCAACAACGC TGACACTATT
CGCGACCGGG CGCGCCAGCG CGCGGCAGCG CGACACGGAG CCGCGATGCG GCGCCGACCT
AAACCTGAAG TACAGGGAGG ATAA
|
|---|
| Protein sequence | MTSLAERAAQ LSPNARAALA RELVRAGTTF PTDICEPVAV VGIGCRFPGN VTGPESFWQL
LADGVDTIEQ VPPDRWDADA FYDPDPSASG RMTTKWGGFV SDVDAFDADF FGITPREAVA
MDPQHRMLLE VAWEALEHAG IPPDSLSGTR TGVMMGLSSW DYTIVNIERR ADIDAYLSTG
TPHCAAVGRI AYLLGLRGPA VAVDTACSSS LVAIHLACQS LRLRETDVAL AGGVQLTLSP
FTAIALSKWS ALSPTGRCNS FDANADGFVR GEGCGVVVLK RLADAVRDQD RVLAVVRGSA
TNSDGRSNGM TAPNALAQRD VITSALKLAD VTPDSVNYVE THGTGTVLGD PIEFESLAAT
YGLGKGQGES PCALGSVKTN IGHLEAAAGV AGFIKAVLAV QRGHIPRNLH FTRWNPAIDA
SATRLFVPTE SAPWPAAAGP RRAAVSSFGL SGTNAHVVVE QAPDTAVAAA GGMPYVSALN
VSGKTAARVA SAAAVLADWM SGPGAAAPLA DVAHTLNRHR ARHAKFATVI ARDRAEAIAG
LRALAAGQPR VGVVDCDQHA GGPGRVFVYS GQGSQWASMG QQLLANEPAF AKAVAELDPI
FVDQVGFSLQ QTLIDGDEVV GIDRIQPVLV GMQLALTELW RSYGVIPDAV IGHSMGEVSA
AVVAGALTPE QGLRVITTRS RLMARLSGQG AMALLELDAD AAEALIAGYP QVTLAVHASP
RQTVIAGPPE QVDTVIAAVA TQNRLARRVE VDVASHHPII DPILPELRSA LADLTPQPPS
IPIISTTYES AQPVADADYW SANLRNPVRF HQAVTAAGVD HNTFIEISPH PVLTHALTDT
LDPDGSHTVM STMNRELDQT LYFHAQLAAV GVAASEHTTG RLVDLPPTPW HHQRFWVTDR
SAMSELAATH PLLGAHIEMP RNGDHVWQTD VGTEVCPWLA DHKVFGQPIM PAAGFAEIAL
AAASEALGTA ADAVAPNIVI NQFEVEQMLP LDGHTPLTTQ LIRGGDSQIR VEIYSRTRGG
EFCRHATAKV EQSPRECAHA HPEAQGPATG TTVSPADFYA LLRQTGQHHG PAFAALSRIV
RLADGSAETE ISIPDEAPRH PGYRLHPVVL DAALQSVGAA IPDGEIAGSA EASYLPVSFE
TIRVYRDIGR HVRCRAHLTN LDGGTGKMGR IVLINDAGHI AAEVDGIYLR RVERRAVPLP
LEQKIFDAEW TESPIAAVPA PEPAAETTRG SWLVLADATV DAPGKAQAKS MADDFVQQWR
SPMRRVHTAD IHDESAVLAA FAETAGDPEH PPVGVVVFVG GASSRLDDEL AAARDTVWSI
TTVVRAVVGT WHGRSPRLWL VTGGGLSVAD DEPGTPAAAS LKGLVRVLAF EHPDMRTTLV
DLDITQDPLT ALSAELRNAG SGSRHDDVIA WRGERRFVER LSRATIDVSK GHPVVRQGAS
YVVTGGLGGL GLVVARWLVD RGAGRVVLGG RSDPTDEQCN VLAELQTRAE IVVVRGDVAS
PGVAEKLIET ARQSGGQLRG VVHAAAVIED SLVFSMSRDN LERVWAPKAT GALRMHEATA
DCELDWWLGF SSAASLLGSP GQAAYACASA WLDALVGWRR ASGLPAAVIN WGPWSEVGVA
QALVGSVLDT ISVAEGIEAL DSLLAADRIR TGVARLRADR ALVAFPEIRS ISYFTQVVEE
LDSAGDLGDW GGPDALADLD PGEARRAVTE RMCARIAAVM GYTDQSTVEP AVPLDKPLTE
LGLDSLMAVR IRNGARADFG VEPPVALILQ GASLHDLTAD LMRQLGLNDP DPALNNADTI
RDRARQRAAA RHGAAMRRRP KPEVQGG
|
|---|
| |