| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_1167 |
|---|
| Symbol | |
|---|
| ID | 5205816 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter sp. PRwf-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009524 |
|---|
| Strand | - |
|---|
| Start bp | 1424908 |
|---|
| End bp | 1430562 |
|---|
| Gene Length | 5655 bp |
|---|
| Protein Length | 1884 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 640599387 |
|---|
| Product | putative outer membrane adhesin like proteiin |
|---|
| Protein accession | YP_001280066 |
|---|
| Protein GI | 148652973 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG2931] RTX toxins and related Ca2+-binding proteins |
|---|
| TIGRFAM ID | [TIGR01965] VCBS repeat |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCAAA AAACTCAGCT TATCATTAAT AAAATTGACA GCGAGTCTAA GTCGGTAATC
TTAGATTACG GACAAACAGG AAAAATTGTT GCAACAAATA ACATGAAAAT ATCTCTCGTT
GATGCTGAGT CTGGCAAACC CATAACTAAC TTAAAAGCAA AAAAATCAGG TGATAATTTA
GTTATTGCTA ATGAGAGTAA TGAAGATATT TTAACGATTG AGAACTATTA TGTTGTAGAT
AATGTTGAAA TAGGCACAAT GACGGATGCA GGGTTCATAG AGTTTACTCC TATTGATAGC
AATGCATCGG TAGTGGGGAC TGTATCAGAA ACCTCATACA CATCTTTGGT TGCTGAAATG
CTAAATACTT CAGTAGCAGC GGAATCCGGC CTGTTGACAG GCATTAGCAA TACCGCACTA
TGGGGAGGAC TTGGGGCTAT AACTCTAGGT GCAGCTGCAT TAAGTGGAGG CGGTAGTTCT
TCGTCAGGTG GAACTCGTAA CAAACATCCA GAATCTAAAG ACACAGCAAT TCAAGCAGTG
GAAGACACGG TAGCAACTGG AAAGCTATCA TCAGCAACTG ATGTTGATGG TGATAAGTTA
ACTTATGCCT TAGCGGACAA AGTGGCCAAT GGTTCTGTGG TAGTAAACGC TGATGGCAGC
TACAGTTATA CACCAAACGC TAACTTCAAT GGTACAGACA GCTTCACGTA CACCATCAGT
GATGGCAAAG GCGGCGTCAT TACTCAAAAA GCTTCTGTCA CGGTTCAAGG TGTCAATGAT
GCACCGGTAT CGACCAACAC CGCTATTAAA GCGGTCGAGG ATACCGCTGC CACAGGTAAA
CTATCACCAG CAACCGATGT GGATGGCGAT AAGCTAACCT ATGCACTAGC GGACAAAGCA
GCCAATGGCA CAGTGACTAT CAGTGCTGAT GGTAGCTATA AATACACACC AAAGGCCAAC
TTTAACGGCA GTGACAGCTT CACTTATACC ATCACTGATG GCACTGAAAC TATTACCCAA
ACCGCAACTA TTACTGTTGA ATCGGTTAAT GATCTACCAG TTTCAAAAGA CACAGCAATT
CAAGCAGTGG AAGACACGGT AGCAACTGGA AAGCTATCAT CAGCAACTGA TGTTGATGGT
GATAAGTTAA CTTATGCCTT AGCGGACAAA GCGGCCAATG GTTCTGTGGT AGTAAACGCT
GATGGCAGCT ACAGCTACAC CCCAAACAAA GACTTCTTTG GTACAGACAG CTTCACGTAC
ACCATCAGCG ATGGCAAAGG CGGCGTCATT ACTCAAAAAG CTTCTGTCAC GGTTCAAGGT
GTGAATGATG CACCGGTATC AACCGACACC GCTATCAAAG CTGTTGAGGA TACCGCTGCC
ACAGGTAAAC TATCACCAGC AACCGATGTG GATGGTGACA AGCTGACCTA TGCACTAGCG
GACAAAGCAG CCAATGGCAC AGTGACTATC AGTGCTGATG GTAGCTATAA ATACACACCA
AAGGCCAACT TTAACGGCAG TGACAGCTTC ACTTATACCA TCACTGATGG CACTGAAACT
ATTACCCAAA CCGCAACTAT TACTGTTGAA TCGGTTAATG ATCTACCAGT TTCAAAAGAC
ACAGCAATTC AAGCAGTGGA AGACACGGTA GCAACTGGAA AGCTATCATC AGCAACTGAT
GTTGATGGTG ATAAGTTAAC TTATGCCTTA GCGGACAAAG TGGCCAATGG TTCTGTGGTA
GTAAACGCTG ATGGCAGCTA CAGTTATACA CCAAACGCTA ACTTCAATGG TACAGACAGT
TTTACCTATA CCATCAGCGA TGGCAAAGGC GGCGTCATTA CTCAAAAAGC TTCTGTCACG
GTTCAAGGTG TCAATGATGC ACCGGTATCA ACCAACACCG CTATTAAAGC TGTTGAGGAT
ACAGTAGCCA CGGGCAAACT ATCACCAGCA ACCGATGTGG ATGGTGACAA GTTAACCTAT
GCACTAGCAG ACAAAGCAGC CAATGGTACA GTGGTTGTGA ATGCTGACGG TAGCTATAAG
TACACACCGA AGGCTAACTT TAACGGTAAA GATAGTTTCA CTTATACCAT CACTGACGGC
ACCGAAACCA TTACTCAGAC AGCAACTATC ACTGTTGCAG CAGTAAATGA TCTACCAGTT
TCTAAAGACA GCGTGATTCA AGCAGTGGAA GACACGGTAG CAACTGGAAA GCTATCATCA
GCAACTGATG TTGATGGTGA TAAGTTAACT TATGCCTTAG CGGACAAAGC GGCCAATGGT
TCTGTGGTAG TAAACGCTGA TGGCAGCTAC AGCTACACCC CAAACAAAGA TTTCTTTGGT
ACAGACAGCT TCACGTACAC CATCAGTGAT GGCAAAGGCG GCGTCATTAC TCAAAAAGCT
TCTGTCACGG TTCAAGGTGT GAATGATGCA CCGGTATCAA CCGACACCGC TATCAAAGCT
GTTGAGGATA CCGCTGCCAC AGGTAAACTA TCACCAGCAA CCGATGTGGA TGGTGACAAG
CTGACCTATG CACTAGCGGA CAAAGCAGCC AATGGTACAG TGGTTGTGAA TGCTGACGGT
AGCTATAAGT ACACACCGAA GGCCAACTTT AACGGCAGTG ACAGCTTCAC CTATACCATC
ACTGATGGCA CTGAAACTAT TACCCAAACA GCAACTATTA CTGTTGCTGC GGTCAATGAC
TTACCAGTTT CAAAAGACAC AGCAATCAAA GCAGTGGAAG ATACGGTAGC AACTGGAAAG
CTATCACCAG CAACTGATGT TGATGGTGAT AAGTTAACCT ATGCACTAGC AGACAAAGCG
GCCAATGGTT CTGTGGTAGT AAACGCTGAT GGCAGCTACA GCTACACCCC AAATAAAGAC
TTCTTTGGTA CAGACAGCTT TACTTATACC ATCAGTGATG GCAAAGGCGG CGTCATTACT
CAAAAAGCTT CTGTCACGGT TCAAGGTGTG AATGATGCGC CTGTATCAAC TAACACCGCT
ATCAAAGCTG TTGAGGATAC CGCTGCCACA GGTAAACTAT CACCAGCAAC CGATGTGGAT
GGTGACAAGC TGACCTATGC ACTAGCGGAC AAAGCAGCCA ATGGTACAGT GGTTGTGAAT
GCTGACGGTA GCTATAAATA TACACCGAAG GCTAACTTTA ACGGTAAAGA TAGCTTCACT
TATACCATCA CTGACGGCAC CGACACTATT ACCAAAACAG CGACGGTTAC TGTGCATGGT
ATTAGCCAAG TTTATAATAA CGAACTACAA GAGGTGTTCG AAACTAGTGT TGTCTCGGAA
CAACAGGTTC TGGTAGATAG ACAGTCATAT AACTCACTGT TCGATGTTAT CACATTCGAA
ATAACGGGTG ACAATGCAAG TGCTGTTCTA AGTTTTTACG ATCCATCTAA TGTTATTAGT
TTAAGTGGTA GTTATGAACT ATATGGCTCT GCATCTAGTT CTTCTGGCTC GCTAAGTGTT
TACTCTTCTG GCTCTCCTTC ATACAGTAAG GTACTAGGTA GTAATTTAGC ACCAGGCAAA
TATACTTTAT ATGTGGATGC TTACGAATAT GGCTCAACGA TCAATATTGA TGTTCTCCAG
TATCAAGATG TAGAACGTAC AGAGTTTACA GGTTATGAAA ATGTTTCAGG TAACATTTTC
GCTGATGCGA ATATCTCTGT TCCTAAGGAC TACATATTAC AAATGGACGG CCAGTCATTG
GCTAGTTCTG AAGCCAATCC AATTGCGATA GAAACCACAA AAGGGACATT TGAGTTATCA
GCTGATGGAT CTTATAACTA TCTATCAAAA GGCTCAGAGC TTGGTTTAGA TCCGAAAAAG
CTTTCTGAAG CATTTAATAT CATAGTGTCA GATACTAAAG GTAATTATCT TGGTGTCTAT
CGTGTTGAAG TTGAACCGGA TACCACACCA CCAGTACCAG GCAAGTTGGT GTTAAGTAAC
TTTGAAGATA CTGGCACATC ACAAGATGAT AGTATCACTC AAGACAATAC GTTTGATCTA
GCGGTACAAG GTAATGAAGC GGGTAGTGCA GTAGAGTTTG AATATTCGTC AGACAATGGT
AAAACTTGGA GTACTATATT TAATGGTTCA GTGTCTAATC TAGAAGATGG CGAATATAGC
TTTAGAGCCA AAGTTACCGA TGAAGCACTT AATCAAAGTC TGACGGAAGT TAAAACAATA
ACGATTGATA CTACGGCACC AGTACTGGTT CAGATTTTAA ATTTTAATAC AGCAACAAAT
ACTCTTGAGG TCGATGCCAA TATCGACAAA GCAACGGTTA AGGCTTATCA GCTATCTAAT
GGGTCTCAAA CGCAGCTTGA CTCAGTTACC AACATTCCTT TTAAAGAAGG TAACTACAGA
ATTGAAGCCT CAGATGTGGC AGGTAATGTC ACAGCTATAG ACTTCATTAT GTCCACAGCC
TCTCAGTATT TCAAATCGAC CGATAATATA GATATTGTTA AAGGATCGAG TTTTAATGAC
TACATCTATG GTGGCAATGG GGATGATATT TTAGTAGCTG AGGAAGGTTT GGATGTAGTT
TATGGCGAAG CTGGAGATGA TATGCTAATA GCATCCAAAG GCTCTCATAT TTTATATGGT
GGTGATGGTA ATGATGTGTT AATAGATGAG GATGGTAGAA GTAGTTTGTC AGGTGGGAAT
GGCAATGACA CATTAACTGC AGCAAGTGGT AGCCACTTTT TATTCGGTGA CAGTGGTAAC
GATATATTAA CTAGTAAAGG GCTTGTTGGT GAAGAGTATC TTAGTAACAG TCTTTTCTTA
AGTGGTGGTG ATGGTGATGA TATATTGATA CTTGATGGAG TTCTATCCAA CGCCAGTGCA
ACCTTCTCAG GTGGGAGTGG TAATAACACG TTTGTAATTG ATGCTTCTGA CTTATTACAA
GATGCAAAAG TTTCTATTAC AAGCTCTAGT ATGTATGATT CGGTTAAGGG GTTGAATATT
CTGCAGTTAC AAGGCGTAGG CTCTGATGAC TTAGTGTTGG AACGTAAAGG TGACGTTGTT
GAAATATCAG TTTCTGGTGG TTTAATCACA ATATCTGACC AGTTTTCTGA ATGGGGAGGT
GGTGTAGATA ATATTTATTT CGATAATGGC GATGTTTGGG ATAGAGCTAC TATTGAAAGT
AATATAAAAG GCCAATGGTA TGGCACAAAT GGCGACGATA CTTTCATCTC TACAGGTGAA
TATTCAGTAT TATTTGGTTT AGATGGGAAT GATAAATTAA CAGGTGGTAT TAATAACGAT
TATATCTATG GTGGCAATGG GGATGATATT TTAGTAGCTG AGGAAGGTTT GGATGTAGTT
TATGGCGAAG CTGGAGATGA TATGCTAATA GCATCCAAAG GCTCTCATAT TTTATATGGT
GGTGATGGTA ATGATGTGTT AATAGATGAG GATGGTAGAA GTAGTTTGTC AGGTGGGAAT
GGCAATGACA CATTAACTGC AGCAAGTGGT AGCCACTTTT TATTCGGTGA CAGTGGTAAC
GATATATTAA CTAGTAAAGG GCTTGTTGGT GAAGAGTATC TTAGTAACAG TCTTTTCTTA
AGTGGTGGTG ATGGTGATGA TATATTGATA CTTGATGGAG TTCTATCCAA CGCCAGTGCA
ACTGAGCTAT GCTGA
|
|---|
| Protein sequence | MNQKTQLIIN KIDSESKSVI LDYGQTGKIV ATNNMKISLV DAESGKPITN LKAKKSGDNL
VIANESNEDI LTIENYYVVD NVEIGTMTDA GFIEFTPIDS NASVVGTVSE TSYTSLVAEM
LNTSVAAESG LLTGISNTAL WGGLGAITLG AAALSGGGSS SSGGTRNKHP ESKDTAIQAV
EDTVATGKLS SATDVDGDKL TYALADKVAN GSVVVNADGS YSYTPNANFN GTDSFTYTIS
DGKGGVITQK ASVTVQGVND APVSTNTAIK AVEDTAATGK LSPATDVDGD KLTYALADKA
ANGTVTISAD GSYKYTPKAN FNGSDSFTYT ITDGTETITQ TATITVESVN DLPVSKDTAI
QAVEDTVATG KLSSATDVDG DKLTYALADK AANGSVVVNA DGSYSYTPNK DFFGTDSFTY
TISDGKGGVI TQKASVTVQG VNDAPVSTDT AIKAVEDTAA TGKLSPATDV DGDKLTYALA
DKAANGTVTI SADGSYKYTP KANFNGSDSF TYTITDGTET ITQTATITVE SVNDLPVSKD
TAIQAVEDTV ATGKLSSATD VDGDKLTYAL ADKVANGSVV VNADGSYSYT PNANFNGTDS
FTYTISDGKG GVITQKASVT VQGVNDAPVS TNTAIKAVED TVATGKLSPA TDVDGDKLTY
ALADKAANGT VVVNADGSYK YTPKANFNGK DSFTYTITDG TETITQTATI TVAAVNDLPV
SKDSVIQAVE DTVATGKLSS ATDVDGDKLT YALADKAANG SVVVNADGSY SYTPNKDFFG
TDSFTYTISD GKGGVITQKA SVTVQGVNDA PVSTDTAIKA VEDTAATGKL SPATDVDGDK
LTYALADKAA NGTVVVNADG SYKYTPKANF NGSDSFTYTI TDGTETITQT ATITVAAVND
LPVSKDTAIK AVEDTVATGK LSPATDVDGD KLTYALADKA ANGSVVVNAD GSYSYTPNKD
FFGTDSFTYT ISDGKGGVIT QKASVTVQGV NDAPVSTNTA IKAVEDTAAT GKLSPATDVD
GDKLTYALAD KAANGTVVVN ADGSYKYTPK ANFNGKDSFT YTITDGTDTI TKTATVTVHG
ISQVYNNELQ EVFETSVVSE QQVLVDRQSY NSLFDVITFE ITGDNASAVL SFYDPSNVIS
LSGSYELYGS ASSSSGSLSV YSSGSPSYSK VLGSNLAPGK YTLYVDAYEY GSTINIDVLQ
YQDVERTEFT GYENVSGNIF ADANISVPKD YILQMDGQSL ASSEANPIAI ETTKGTFELS
ADGSYNYLSK GSELGLDPKK LSEAFNIIVS DTKGNYLGVY RVEVEPDTTP PVPGKLVLSN
FEDTGTSQDD SITQDNTFDL AVQGNEAGSA VEFEYSSDNG KTWSTIFNGS VSNLEDGEYS
FRAKVTDEAL NQSLTEVKTI TIDTTAPVLV QILNFNTATN TLEVDANIDK ATVKAYQLSN
GSQTQLDSVT NIPFKEGNYR IEASDVAGNV TAIDFIMSTA SQYFKSTDNI DIVKGSSFND
YIYGGNGDDI LVAEEGLDVV YGEAGDDMLI ASKGSHILYG GDGNDVLIDE DGRSSLSGGN
GNDTLTAASG SHFLFGDSGN DILTSKGLVG EEYLSNSLFL SGGDGDDILI LDGVLSNASA
TFSGGSGNNT FVIDASDLLQ DAKVSITSSS MYDSVKGLNI LQLQGVGSDD LVLERKGDVV
EISVSGGLIT ISDQFSEWGG GVDNIYFDNG DVWDRATIES NIKGQWYGTN GDDTFISTGE
YSVLFGLDGN DKLTGGINND YIYGGNGDDI LVAEEGLDVV YGEAGDDMLI ASKGSHILYG
GDGNDVLIDE DGRSSLSGGN GNDTLTAASG SHFLFGDSGN DILTSKGLVG EEYLSNSLFL
SGGDGDDILI LDGVLSNASA TELC
|
|---|
| |