| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_3982 |
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| Symbol | |
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| ID | 5210965 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus sp. RS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009523 |
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| Strand | + |
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| Start bp | 4983254 |
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| End bp | 4984660 |
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| Gene Length | 1407 bp |
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| Protein Length | 468 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640597573 |
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| Product | protein-export membrane protein SecD |
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| Protein accession | YP_001278279 |
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| Protein GI | 148658074 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.728055 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCGTAGTC GAGATATTTA CTCGTTGATC TTCATTCTGC TGATTGCTGG CATTGCGCTG
TCAATCGTCT TCGCCCCGGA AGGGCGCTGG TTGTTCAACC GCGACGTCAG CGTTCGCCTG
GGGCTGGACT TGCGTGGCGG CATCCAGGTG CTGCTGCGCG CTGCAGAGCC GGTTGAACGC
AGCGTGATGC AAACAGCAGC TGGTGTCATC GAGCGCCGTA TCAACGGTTT AGGGGTTGCC
GAGTCGGTGG TTCAGCTGTC GGGGAATGAC CGGATCATCG TCGAGATACC CGGTATTGAT
AACCCCGAAC AGGCGATTGA AACCCTGCGC GGCACCGGTA AACTGGAGTT CATCGACACC
AAAGGCGAGT TTCTGGCGCC AGGCACGATT GTGCGCACAA CCGGCAGCCC CAATCCGGTT
GCGCTGCGTC CTACCGCCAC GGTGACCGGC ACAGAGGAGA TAACGCCGAC CGTGCCGGAG
GGTCCGATCT ACGAGAGCAT TACCGACGGC AAAGATCTGG ATCTGAACGC GGTGCAACCG
CCGCAGATCG CCGGTCAGAG TCTGACGAAC CAGTTTGCTG TGCCGTTCGC CTTTACCGGA
GAATCGGCGC GTCGTCTGGA GCAGTTCACC GCCGCCAACA TTCAGCGCCC GATGTGTATC
GTGCTCGACA ATCAGGTCTT CAGTTGTCCG GTTGTTCAGG CGGCGCTGAT CGGCGGGCGC
GGCGAAATTA CGACCAGCAC GCGCCAGGAC GCAGAGCAGA TCTACACCCA GCTCAAGTAT
GGCGCACTGC CAGTTCCGTT GCAGGTCGAA TCGAGCCGGA CGGTCTCGGC GTCGCTTGGG
CAGGGGTCGG TCGATGCCAG CATTGTGGCG GGTCTGGTCG GGTTGCTCAC AGTGGCGTTG
TTCATGATCC TGTTCTATCG CCTGCCCGGT TTTCTGGCGA CTGTGGCGCT TCTGCTCTAT
ACGGTGATCA GTTTTGCGCT GTATCAGTTG ATCCCGGTGA CGCTGACGCT ACCAGGTATT
GCCGGTTTCA TTCTGTCGAT CGGGGTGGCG GTTGATGCGA ATGTGCTCAT TTTTGCGCGA
CTGAAAGAAG AGTTGCGGCA CGGCAGATCG CTGAATGCGT CGATTGACGC TGCTTTCGTG
GAAGCATGGC CCGCCATCCG CGACTCGAGC GTGGCAACGT TGATCACCTG CACCATCCTG
TTCATGTTCG GCAATACCTT TGGCGTGAGC CTGATCAAGG GGTTCGCGCT GACGCTTGGG
CTTGGCATTT TGCTGAGCCT GTTTACAGCG ATGGTCGTTA CGCGCACATT CCTGCATGTG
ATCAACCCAT TGCCGTTTGC GCAGAACCCC TGGCTGTACG AACTGAGGGA TGCGCCGGGG
ATGCGTCACG CGCGCGAGGC GGCATAA
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| Protein sequence | MRSRDIYSLI FILLIAGIAL SIVFAPEGRW LFNRDVSVRL GLDLRGGIQV LLRAAEPVER
SVMQTAAGVI ERRINGLGVA ESVVQLSGND RIIVEIPGID NPEQAIETLR GTGKLEFIDT
KGEFLAPGTI VRTTGSPNPV ALRPTATVTG TEEITPTVPE GPIYESITDG KDLDLNAVQP
PQIAGQSLTN QFAVPFAFTG ESARRLEQFT AANIQRPMCI VLDNQVFSCP VVQAALIGGR
GEITTSTRQD AEQIYTQLKY GALPVPLQVE SSRTVSASLG QGSVDASIVA GLVGLLTVAL
FMILFYRLPG FLATVALLLY TVISFALYQL IPVTLTLPGI AGFILSIGVA VDANVLIFAR
LKEELRHGRS LNASIDAAFV EAWPAIRDSS VATLITCTIL FMFGNTFGVS LIKGFALTLG
LGILLSLFTA MVVTRTFLHV INPLPFAQNP WLYELRDAPG MRHAREAA
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