Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RoseRS_3638 |
Symbol | |
ID | 5210616 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus sp. RS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009523 |
Strand | + |
Start bp | 4550286 |
End bp | 4551797 |
Gene Length | 1512 bp |
Protein Length | 503 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640597231 |
Product | secretion protein HlyD family protein |
Protein accession | YP_001277943 |
Protein GI | 148657738 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.266214 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCCTTC CCATACTCAG AGTCGCCATT GGAATGCTGG CAGTTGTTCT GCTGATCGGC GCTGTGCTGA TGGCATCCGG TCGCACAGGT GTTTTGCCTG CCACGCAGTC AGCGCCTGAC TCTGCGCCGC CGCCACCGGT TGTTGCGCCC GGTACGCAAC CGATCGTGGC GAACGGCATT GTGGCGCCGG CAACGCACGT CGATCTGCGC TTCGAGACCG GTGGGATCGT GCGGGATGTG CTGGTGCGCG AAGGAGATGT CGTTCAGGCT GGCGATCCGA TCCTGCGTCT CGACACAAGC GACCTGGAAC TGCGATGCGC TCAGGTGCGC GCGCAACTAT CGGCAGCTCA GGCGCAGTAT GAACTGCTGG CCGGTCCGGT GGCGCCAGCC GATATTCAAC GCGCCCAGGC GGTGCTGGCA CGTGCCCGGG CGCATCTACG CGAAGTGAGC GGCGCGGTCA CCCCGACTGC TCGACGGGCG GCGCAGGCGC GACTCGAAGC CGCGCGTGTG GCGCTGGCGC GTCTCGAAGA AGGTCCGAAT CCGGCGGATG TGCGCGCCCT GCGTGCCGAA CTGCGCCAGG CGGAAGCGGA ATTGCGGGCG ACGCACGATC GCCTGTCGCT CGAAAAGACC ACGCTGCGTC TGCAGATGGA ACAGGCAGCC AATGTCCTGC GCGATCGTCA GACGGAGTAT GCGCGCATCC GCGACGAGAA CCAGGCGCGA ACCGAGCCGC TGACAGCCGA TCAGCGTGTA CGGGAAGCCA GCGCGCGACT GGCGATGGAA AATGCCGAGA AGGCGCTCGA ACAGGCGCGC GTGGCGTATG AAGCTGCGCT CCAGGCGGAA CGAACCGGCA TCGCCGCTGC CGAGGCGCGT GTCGAAGCTG TGAAAGCGCG CCTGGATCGC ATCCTGGCAG GCGCCGATGC GGATCAGATC GCCGCAGCGC GCGCAGCGGT CGCGCAGGCG GAAGACGATC TGGCGCGCCT TCAGGACGAA CGCCGTGCGG CGCTCGTCGA GATCGCCCGA ATGGAGGTGG CAATCGCCGA AGCCGAACTG GAGCGCTTGC TGGCTGGAGC GCGCCCGGCG GAGGCGGCGA TTGCGCGCGC ACGTGTCGAG GAAGCGCGCG CGGCGCTTCA GCAGGCGGAA CTCGCGCTGG AACGCGCCAC ACTTCGCGCT CCGATAACCG GAGTGGTCGC AGCGCTCAAT ATCCGCCCCG GCGAAGTCGC AGACCCCCAT CTCGTTGCCG CCAGGCTGGC GGATGTGCGC GGATGGCGTA TCGAAACCAC CAATCTGAGC GAACTGAATG TGACGCGCCT GCGCGAGGGC GACCCGGCGA TCATCCGTCT GAATGCGATC CCGGACCTCG AAATTCCCGG CAGGGTGACC AGTATCAAAC CACTGGGCGC CGGTCAGGAA GGTGATGTGA CACTCTACAC CGTGATTATC ACTCCTGATC GACTGGATGA GCGGTTGCGC TGGAATATGA CCGCAATGGT GCAGATTACA CCGGGGCGTT AG
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Protein sequence | MSLPILRVAI GMLAVVLLIG AVLMASGRTG VLPATQSAPD SAPPPPVVAP GTQPIVANGI VAPATHVDLR FETGGIVRDV LVREGDVVQA GDPILRLDTS DLELRCAQVR AQLSAAQAQY ELLAGPVAPA DIQRAQAVLA RARAHLREVS GAVTPTARRA AQARLEAARV ALARLEEGPN PADVRALRAE LRQAEAELRA THDRLSLEKT TLRLQMEQAA NVLRDRQTEY ARIRDENQAR TEPLTADQRV REASARLAME NAEKALEQAR VAYEAALQAE RTGIAAAEAR VEAVKARLDR ILAGADADQI AAARAAVAQA EDDLARLQDE RRAALVEIAR MEVAIAEAEL ERLLAGARPA EAAIARARVE EARAALQQAE LALERATLRA PITGVVAALN IRPGEVADPH LVAARLADVR GWRIETTNLS ELNVTRLREG DPAIIRLNAI PDLEIPGRVT SIKPLGAGQE GDVTLYTVII TPDRLDERLR WNMTAMVQIT PGR
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