| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_2504 |
|---|
| Symbol | |
|---|
| ID | 5209473 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | + |
|---|
| Start bp | 3095241 |
|---|
| End bp | 3096746 |
|---|
| Gene Length | 1506 bp |
|---|
| Protein Length | 501 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640596109 |
|---|
| Product | EmrB/QacA family drug resistance transporter |
|---|
| Protein accession | YP_001276831 |
|---|
| Protein GI | 148656626 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.300835 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTCAACGC AGCGCACGAT CCTGATCACT GCCGGGCTGA TGCTCAGCCT GTTTCTCGCA
TCGATGGAGT CGACGGTTGT CAGCACCGGC ATGCCAACAA TCGTCAGCCA GCTGGGAGGT
CTCGAAAGTT ACAGCTGGGT ATTCACCGCT TTCATGCTCG CCTCAACAAC GACCGTTCCG
CTGTACGGCA AACTCTCCGA TCTTTTCGGG CGACGACCAG TATTCGTCGC AGCTATGGCG
ATCTTTCTGA TCGGATCGGC GCTCTGCGGT CTGGCGGCGA CGATGCCGCA ACTGATCGCC
TTCCGCACTA TTCAGGGGAT CGGCGCTGGC GGGTTGCTGC CGCTGGTGTT CATCATCATC
GGCGACCTGT TTTCACTGGA GCAGCGCGCC CGGTTGCAAG GGCTGTTTTC GGGAGTATGG
GGCATATCGT CGATCACAGG ACCGTTGCTG GGCGGCTTTA TTGTCGATCA GGCGTCGTGG
CAGTGGATTT TCTGGATCAA CATCATTCCC GGTCTGGCGG CGACGGCGAT TGTCTGGTTC
GCCTGGATCG ATCGCGCGCG CGCCCACGAC GCGCCGCCAC GTTCGATCGA CTACGCCGGA
GCATTGCTGC TGACTGCCGG AGCAGTTGCG TTGCTCATGA GCCTGACCGA TCTGAGCGCG
TCGTGGGCGC TGCCGACGCT GGCGGGGGCG CTGGCGCTGT TTGGGGCGCT GGTGTGGGTC
GAGCGCCGCG CGAGCGATCC GGTGTTGCCG ATTGGGCTGT TCCACGACCG GATGTTCCTG
GTTGCCTGCG GTCACGGCAT CCTCGCTGGC TGCGCCGTGT TTGGCGGTGC GACATTCGTG
CCCCTGTATG TGCAGGGAGT GTTGGGCACA AGCGCAACCG AGGCAGGAGC GGCGCTTATG
CCGATGCTGC TGGCGTGGGT CTTTTCGAGC ATTCTCGGCA CGCGGCTGTT ACTTCGATTG
GGATACCACA CTATTGCACT TGCGGGCATG GTGGCGCTGG TTATCGGCGC TTTTCCGCTC
ATGTTCCTCG ATACGCAAAC CAACCGTCTA CTGCTGATGA CAAGTCTGGG GTTGATGGGA
TTCGGCATGG GCTTTTCGAT CCCGGCGTTC CTGATCGCAG TTCAGAGCAC CGTTGAACGC
AGCAAGCTGG GGACAGCCAC CTCGACCCTT CAGTTCAGTC GCAGCATCGG CGGCGCGTTC
GGCATTGGCA TCATGGGGGC AATTCTCAGC GCTATTGTGG TCGCACATCT GGTTGCTGCC
GGTCTCGATG CCTCTACCTC GCTCAACAGT CTGATCGATT CGCCGGGAAG CGACTCCGCA
GTGCAGGCGA TGCTGCGCGA CGCGTTGAGC GCCGGTATCC GCAGCGTGTT CATTGTAGGG
TTCATTGCAT CCGTGCTGGG ATTGCTGGTG ACGCTGCTTG CGCCACGCGG GCAGATCGCG
CAGATGAGCG CTGAGCGTGA ACGTCGTGAG GGTGTGGTAC ATCCGGCAGC AGAACACGGA
CGTTGA
|
|---|
| Protein sequence | MSTQRTILIT AGLMLSLFLA SMESTVVSTG MPTIVSQLGG LESYSWVFTA FMLASTTTVP
LYGKLSDLFG RRPVFVAAMA IFLIGSALCG LAATMPQLIA FRTIQGIGAG GLLPLVFIII
GDLFSLEQRA RLQGLFSGVW GISSITGPLL GGFIVDQASW QWIFWINIIP GLAATAIVWF
AWIDRARAHD APPRSIDYAG ALLLTAGAVA LLMSLTDLSA SWALPTLAGA LALFGALVWV
ERRASDPVLP IGLFHDRMFL VACGHGILAG CAVFGGATFV PLYVQGVLGT SATEAGAALM
PMLLAWVFSS ILGTRLLLRL GYHTIALAGM VALVIGAFPL MFLDTQTNRL LLMTSLGLMG
FGMGFSIPAF LIAVQSTVER SKLGTATSTL QFSRSIGGAF GIGIMGAILS AIVVAHLVAA
GLDASTSLNS LIDSPGSDSA VQAMLRDALS AGIRSVFIVG FIASVLGLLV TLLAPRGQIA
QMSAERERRE GVVHPAAEHG R
|
|---|
| |